Aquimarina sp. AD10: D1816_01295
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Entry
D1816_01295 CDS
T05712
Name
(GenBank) ATP-dependent helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
aqd
Aquimarina sp. AD10
Pathway
aqd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aqd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D1816_01295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aqd03019
]
D1816_01295
03009 Ribosome biogenesis [BR:
aqd03009
]
D1816_01295
Enzymes [BR:
aqd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
D1816_01295
Messenger RNA biogenesis [BR:
aqd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
D1816_01295
Ribosome biogenesis [BR:
aqd03009
]
Prokaryotic type
rRNA helicases
D1816_01295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Motif
Other DBs
NCBI-ProteinID:
AXT59041
LinkDB
All DBs
Position
complement(366408..368165)
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AA seq
585 aa
AA seq
DB search
MNKFEELGLGEAIIKAVNDMGFETPSEVQEKAIPILLDQDTDIVALAQTGTGKTAAFGFP
LIEKIDSKSRITQGLILSPTRELCLQITNELKNYSKFVPGLNTVAIYGGASITDQAKQIK
RGAQIVVATPGRMQDMINRKLVDISNIGYCILDEADEMLNMGFYEDINAILSHTPDDKST
WLFSATMPREVSTIAKRFMHDPVEITVGHKNTGSKNVSHEYYVVNSRDRYAALKRLADAN
PDIFSVVFCRTKRDTQKVAENLIVDGYNAAALHGDLSQNQRDLVMKSFRNRQIQMLVATD
VAARGIDVDDVTHVINYQLPDEIETYTHRSGRTGRAGKSGVSMVIVSKSEIRKIKSVERI
IKKSFEKKEIPSGEEICQVQLFHLASDIGKAEINHEIDSYLPSINEVLEEFSKEELIKKF
FSVEFSRFHNYYKKSRDLNVVNDRDRESRSGDGSTRYFINVGEKDGFDWMTLKDFLKETL
GLGRDALSRVDVKENFSFFNTSSEQQETVLSIFEDFKMDGRKVNVEVSKDSGRRGGRRRR
DNDGGGYKGKRRSDGFKPKGKKRFGGDSQSGDNQRRDRRKRSDRR
NT seq
1758 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaatttgaagagttaggcctaggtgaagccataataaaggcggtgaatgatatg
gggtttgagaccccaagtgaggtgcaagaaaaggcaattcctattttacttgatcaagat
acagatattgtagctcttgcgcaaaccggaacaggaaaaacagctgcttttggttttcca
ttaattgaaaaaatagatagtaaaagcagaatcacacaaggattgattttatctcctact
cgtgaactttgtttacaaattacaaacgaacttaaaaactactctaaatttgttccagga
cttaatactgtagctatttatggtggtgctagtattactgatcaggctaaacaaatcaaa
cgtggagcccaaatagtagttgctactcctgggcgtatgcaagatatgatcaatcgtaaa
ttggttgatattagtaatatcggttattgtattcttgatgaagcagatgaaatgcttaac
atgggattttatgaagatattaatgctattttatctcataccccagatgataaaagtact
tggttattttctgccacaatgcccagagaagtatctacaatagctaaacgttttatgcat
gatcctgtagaaattacagttggtcataaaaataccggatctaagaatgtatctcacgaa
tattatgtagttaactctagagatcgttatgctgccttaaaacgtcttgcagatgcaaat
cctgacatcttttctgttgtgttttgtagaacgaaacgcgatacccaaaaagttgccgag
aatcttattgtagatggatataatgctgcagcacttcatggtgatctaagtcagaatcag
cgagatctggttatgaaaagttttagaaatcgtcaaattcaaatgttagttgctacagat
gttgcagcaagaggaattgatgttgatgatgtaacgcatgttattaattatcaattacct
gacgaaatagaaacatacactcatagaagtggaagaactggacgtgctggtaaaagcggt
gtttctatggtaattgtttctaaaagtgaaattagaaaaatcaaatctgtagaacgtatt
ataaaaaagagtttcgagaaaaaagaaattccaagtggagaagaaatatgccaagtgcaa
ctatttcaccttgcaagtgatatcggtaaagcagaaataaaccatgaaattgatagttac
cttccttctataaatgaagttttagaagagttttctaaagaagagttaataaaaaagttc
ttctctgtagaattttctcgtttccataattactataaaaagtctagagatttaaatgtt
gttaatgacagagatagagaatctagaagtggtgatggaagcacacgttattttataaat
gttggagaaaaagatggttttgattggatgactcttaaagattttcttaaagaaactcta
gggttaggtcgcgatgctttaagtcgtgtagatgtcaaagaaaatttctctttctttaat
acaagttcagaacaacaagaaactgttctatctatttttgaagatttcaagatggatggc
agaaaagtaaatgtagaagtttctaaagattctggtcgacgtggtggaagacgtcgtaga
gataatgatggtggaggttacaaaggaaaacgaagaagtgatggttttaaaccaaaaggt
aaaaaacgttttggtggtgatagtcaaagtggtgataatcaaagaagagacagaagaaaa
cgcagtgatcgaagataa
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