Aquimarina sp. AD10: D1816_03210
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Entry
D1816_03210 CDS
T05712
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
aqd
Aquimarina sp. AD10
Pathway
aqd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aqd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D1816_03210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aqd03019
]
D1816_03210
Enzymes [BR:
aqd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
D1816_03210
Messenger RNA biogenesis [BR:
aqd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
D1816_03210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
P-loop_SecA
AAA_22
Rubella_Capsid
Shikimate_DH
Motif
Other DBs
NCBI-ProteinID:
AXT59398
UniProt:
A0A3A9V715
LinkDB
All DBs
Position
776586..777818
Genome browser
AA seq
410 aa
AA seq
DB search
MSFNTLGLSEPLLRAVQKKGYTTPSPIQEKAIPPILEKKDVLASAQTGTGKTAGFTLPVL
QLLSQGQQLRKRPVRALVLTPTRELAAQILDNVRAYSEFLDVRSMVIFGGVNAKPQIRGL
RNGVDLLVATPGRLLDLHSQKALSLSKIEVLVLDEADRMLDMGFQRDINKILGLLPERRQ
NLLFSATFSKEIKKLANGILHHPVSVEAAPENTTAEKVKQKIYRVDKSKKTTLIIKFITD
GNWEQVLVFTRTKHGANRLTEKMNKNNISAAAIHGNKSQGARTKALSGFKKGTIRVLVAT
DIAARGLDIPLLPHVVNFELPNIPEDYVHRIGRTGRAGASGEAISLVSEDEVAYVKGIEK
LLGEKLENNVVEGFEPTMSARDVKQGPRNNNNRKPKAKNKSRNYKRRSGR
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttaatactttaggtttatccgaacccttgttacgtgctgttcaaaaaaaagga
tatacaacaccttctccgattcaagaaaaggctattccaccaattttagaaaagaaagat
gtattggcgtctgcccaaacaggaacaggaaaaacagcaggatttacattacctgtttta
caactgttatcacaaggacaacagcttagaaaaagacctgtgcgtgctttagtattaaca
cctactagagaattagctgctcaaatattagataatgtaagagcttatagtgagttttta
gatgtacgatcaatggtgatttttggtggagtcaatgctaaaccgcaaataagaggtttg
cgtaatggtgtggatcttttagtagcaactcctggtcgattattagatttacactcccaa
aaagcactttctttatctaaaatagaagtattagttctcgatgaagctgatcgtatgctt
gatatggggtttcaaagagatatcaacaaaattttagggttgttgcctgaaagaagacag
aatcttttgttttcagcaacattttctaaagaaattaaaaaattagcaaacggaatatta
catcatcctgtatctgtagaagcggctccggaaaatacaaccgcagaaaaggtaaaacaa
aaaatatatagagtagataaaagcaaaaaaacaacgcttattatcaaattcattacagat
ggaaactgggaacaggtacttgtttttacacgaacaaagcacggtgctaatcgtcttact
gaaaaaatgaataagaataatatttcggcagccgctattcatggtaataaaagtcaagga
gcaagaacgaaagccttatcaggatttaaaaaaggtacaatacgagtattggttgctaca
gatatcgcagcgagaggattagatatccctttgttaccacatgttgtaaattttgaatta
cctaatattcctgaagattatgtgcataggatcggtcgaactggtagagcaggggctagt
ggtgaagctatatccttggttagcgaggatgaagtggcctatgtaaaaggaatagaaaaa
cttttaggagaaaaattagaaaataatgttgtagaagggttcgaacccactatgagcgct
agagatgtaaaacaaggccctagaaataataacaacagaaaacctaaggcaaaaaacaaa
tctagaaattataaaagaagatccggtaggtaa
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