Aquimarina sp. AD10: D1816_05880
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Entry
D1816_05880 CDS
T05712
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
aqd
Aquimarina sp. AD10
Pathway
aqd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aqd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D1816_05880 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aqd03019
]
D1816_05880 (recQ)
03400 DNA repair and recombination proteins [BR:
aqd03400
]
D1816_05880 (recQ)
Enzymes [BR:
aqd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D1816_05880 (recQ)
Messenger RNA biogenesis [BR:
aqd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
D1816_05880 (recQ)
DNA repair and recombination proteins [BR:
aqd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
D1816_05880 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
HTH_40
RQC
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
HEM4
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
AXT59898
LinkDB
All DBs
Position
1382620..1384731
Genome browser
AA seq
703 aa
AA seq
DB search
MPDQQQILTTLKEYFGYDSFRPLQEEIISSIFKSKDNLVIMPTGGGKSICYQLPALLLPG
VTLVISPLIALMKDQVDGLSANGINAAFINSSQHENEQQEIYQKILDKQLKLLYVAPESL
SFLDTVLSQVVVSLIAIDEAHCISSWGHDFRPAYTQLGYLKNKFPKTPVIALTATADKAT
RQDICNQLNIPNATQHLASFDRKNLSLEVRPGNKRIEQILNFLEERPNESGIIYCLSRKA
TETIAEKLQNQGFNAQAYHAGIDHQKRATVQENFVNDSLQIVCATIAFGMGIDKSNVRWV
IHYNLPKNIEGYYQEIGRAGRDGLPSSTLLFHSYADVVQLQKFADMSGNKDVQLAKLDRM
KQYAESLSCRRKILLSYFGELIVDDCGNCDVCKNPPTFIDGTILAQKVLSTVTRIKEQEP
IGTVIDVLRGAQNATVFDKGYQHLKSYKIGNDIPWKDWQQYIIQLINQGYLEIAFHQNNK
IKLTSLSKKVLFENEKISLAHLKDFEKAKQIITEVSSKTKANSLFDKLRELRLTLAKEAG
IPAYQIFSDATLKEMELHRPMSDEEFIQINGVGRQKMQNYGYQFIKEIINFSSTKTKKKK
KSNKGNTHKETLSLYQEGLSIEEISIKRQLTTSTIFSHIMKLYNEGENIDLKQFISKTDI
NSVKNAKQELNTPEGLKPYFEHFEGAIDYNTIKLALTILENEN
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgccagatcaacaacaaatcctaacaacgttaaaagagtattttggatatgatagtttc
agaccattacaagaagaaattatatcatctatttttaaaagtaaagacaatctagttatc
atgccaaccggaggcggtaagtctatatgctatcaacttccggctctattacttcctggg
gttactttagtaatttctccattaatcgctttaatgaaagatcaagtagatggtttatct
gccaatggtattaatgcggcttttatcaatagtagtcaacacgaaaacgaacaacaagaa
atttatcaaaaaattctagacaaacaattaaagcttctatatgtcgcaccagaaagttta
agttttttagatacagtattatcacaagtagtagtaagtttaatagcaatagatgaagcg
cattgtatatcatcttggggacatgattttagaccagcatatacgcaattaggatacctt
aaaaataaattccctaaaactcctgtaattgccttaactgcaactgctgataaagctaca
aggcaagatatttgcaatcaattaaatatccctaatgctacacaacatctagcatctttt
gatagaaaaaacctaagtcttgaagtacggccaggaaataaacgtattgagcaaatttta
aattttctagaagaaaggcccaatgaaagcggaattatatattgcttaagtaggaaagca
acagaaacaatagccgaaaaattacaaaatcaaggattcaatgcacaagcatatcatgca
ggtattgatcaccaaaaaagggcaactgttcaagaaaattttgttaatgactctctacaa
atcgtttgcgcaactattgcctttggtatgggaattgacaaatccaatgtacgctgggtt
attcattacaatctacctaagaatatcgaaggttactatcaagaaataggtcgagctggt
cgtgatggcttaccatcttctactctactgtttcatagctatgcagacgtggtacaacta
caaaaatttgcagacatgtctggaaataaagatgtacaacttgcaaaacttgatcgtatg
aaacaatatgctgaatcgttaagttgtcgtcgtaaaatattattaagttattttggagag
cttatcgttgatgattgtggtaattgcgacgtatgcaaaaatccgccaacatttattgat
ggtactatactagcgcaaaaagtattgtcaaccgtaacaagaattaaagagcaagaacca
ataggcactgtaattgacgttttaagaggggcgcaaaatgcgactgtatttgataaagga
tatcaacatttaaaaagttataaaatcggtaatgatatcccttggaaggattggcagcag
tatatcatacaattaataaatcaaggatatcttgaaattgcatttcatcaaaataacaaa
ataaaacttacatcactttcgaaaaaagtgttatttgaaaatgaaaaaataagtcttgct
caccttaaagatttcgaaaaagcgaaacagatcattactgaggtttcatctaaaacaaaa
gcaaactctttatttgataaattacgtgaattacgcttaactcttgcaaaagaagcagga
atacctgcatatcaaatttttagtgatgctacattaaaagagatggaattgcaccgacca
atgagtgatgaagaatttatccaaattaatggtgtgggacgacaaaaaatgcagaactat
ggataccaatttattaaagaaattataaatttctcttctacaaaaactaaaaagaagaaa
aagtctaacaaaggaaatacacataaagaaacattaagtttatatcaagaagggctctct
atcgaggaaatttctattaagcgacagcttactacgtctactatattttctcacatcatg
aaactttataatgagggtgaaaatattgatttgaaacagtttatcagtaaaacagatatt
aattctgtcaaaaatgccaaacaagaactaaatacacctgaaggattaaaaccttatttt
gaacattttgaaggagcaattgattataacaccataaaacttgctttaactattttagag
aatgaaaattaa
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