Aquimarina sp. AD10: D1816_10110
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Entry
D1816_10110 CDS
T05712
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
aqd
Aquimarina sp. AD10
Pathway
aqd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aqd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
D1816_10110 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aqd03021
]
D1816_10110 (rpoC)
03400 DNA repair and recombination proteins [BR:
aqd03400
]
D1816_10110 (rpoC)
Enzymes [BR:
aqd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
D1816_10110 (rpoC)
Transcription machinery [BR:
aqd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
D1816_10110 (rpoC)
DNA repair and recombination proteins [BR:
aqd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
D1816_10110 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
AXT60691
LinkDB
All DBs
Position
complement(2464423..2468724)
Genome browser
AA seq
1433 aa
AA seq
DB search
MARNNDKNTVKRFNKISIGLASPESILAVSQGEVLKPETINYRTHKPERDGLFCERIFGP
VKDFECACGKYKRIRYKGIVCDRCGVEVTEKKVRRDRVGHINLVVPVAHIWYFRSLPNKI
GYLLGLPSKKLDMIIYYERYVVIQPGIAKNEEGEPVQKMDFLTEEEYLNILDSLPQENLY
LDDTDPNKFIAKMGAECLIEILRRIDLDGLSYELRHKANNETSKQRKTEALKRLQVVESL
RDANKNRENRPEWMILKVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLM
EIKAPEVILRNEKRMLQESVDSLFDNTRKASAVKTDSNRPLKSLSDSLKGKQGRFRQNLL
GKRVDYSARSVIVVGPELKLFECGLPKNMAAELYKPFVIRKLIERGIVKTVKSAKKIIDR
KEPVVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADFDG
DQMAVHLPLGPEAILEAQLLMLASHNILNPANGSPVTVPSQDMVLGLYYMTKSRRSTPEL
EIKGEDLTFYSPEEVVIAYNEKRLDINANIKVRTKDINEEGEIVTKIIETTTGRVLFNDK
VPEKAGYINEVLTKKSLRDIIGGILKVTSVPETAAFLDEIKTLGYNFAFRGGLSFSLGDI
IIPKEKHTMIADANSQVDNIVANYNMGLITNNERYNQVIDIWTSTNAELTELSMKRIRED
QQGFNSVYMMLDSGARGSKEQIRQLTGMRGLMAKPKKSNSAGGEIIENPILSNFKEGLSI
LEYFISTHGARKGLADTALKTADAGYLTRRLVDVAQDVIVNIEDCGTLRGVEVAPLKKNE
EIIEGLGARIVGRTALTDVINPLTQEVLIEAGTEIDDATAKLIENSPVETVEVRSALTCE
AKKGICVKCYGRNLATGKTVQRGEAVGVVAAQSIGEPGTQLTLRTFHVGGIAGNISEDNQ
LKSKFAGKAEIEELKTVKGEDNDGKEIDVVISRTSEVKVIDPKTKIVLSTNLIPYGSQLF
IKDGDKLEADQVICQWDPYNGVIISEFAGKVKYENIEQGITYQVEIDEQTGFQEKVISES
RDKKKIPTLLIMGKGDEVLRSYNLPVGAHLMVDDNDKIGVGKILVKIPRKSAKAGDITGG
LPRVTELFEARNPSNPAVVSEIDGVVSFGKIKRGNREIIVESRIGEIKKYLVKLSNQILV
QENDYVRAGMPLSDGSTTPEDILKIKGPSAVQQYLVNEVQEVYRLQGVKINDKHFEVVVR
QMMRKVRIQDPGDTIFLENQLVHKSDFIEENDEIFGMKVVEDAGDSANLKAGQIISPRDL
RDENSVLRRDDKNLVTARDVSPATATPILQGITRASLQTKSFISAASFQETTKVLNEAAV
SGKVDTLEGLKENVIVGHRIPAGTGMRDYESIIVGSNEEFEERMEQRQEVNYN
NT seq
4302 nt
NT seq
+upstream
nt +downstream
nt
atggcaagaaataatgataagaatacagtaaagagatttaacaaaatctctattggttta
gcttctccagaatctattttggcagtttctcaaggagaagtacttaaacctgaaactatc
aattatcgtactcataaaccagagcgtgatggtttattctgtgagcgtatttttggacct
gtaaaggactttgaatgtgcttgtggtaaatataaaaggattcgttacaaagggatcgta
tgtgatcgatgtggagtagaagtaacagaaaagaaagtacgtagagatcgtgttggtcac
attaacttagtggttcctgtggctcatatttggtatttccgttctttaccaaataaaata
ggatatttacttgggttgccatctaagaaattagatatgatcatttactacgaacgttat
gtagtaattcaaccaggtattgcaaaaaatgaagaaggagaaccagtacaaaaaatggat
ttccttacagaagaagagtaccttaacatcctagatagtcttcctcaagaaaacctttac
cttgacgatacagacccaaataagtttatcgctaaaatgggtgcagaatgtcttattgag
attttaagaagaattgatcttgatggactttcttatgagttaagacataaagcaaataac
gaaacttctaaacaacgtaaaactgaagcattaaaaagacttcaagttgtagagtcgtta
cgtgatgcaaataaaaatagagagaatcgtccagaatggatgatcttaaaagtggttccc
gtaattccaccagaattacgtccgttagtgcctttagatggtggtcgttttgcgacatcg
gatcttaatgatttatatcgacgtgtaattattcgtaataatcgtttaaaacgtttgatg
gaaattaaagctccggaggtaattttacgtaatgaaaaacgtatgcttcaggaatcagta
gattcattatttgataatacgcgtaaagcatctgctgttaagacagactctaataggcca
ttaaaatctttatcagattcattaaaaggtaagcaaggacgtttccgtcaaaacttactt
ggtaaacgtgtagattattcagcacgttctgtaattgttgtaggaccagaattaaaatta
tttgagtgtggtcttccaaaaaatatggcagcagaattatacaagccatttgttatcaga
aaactgattgagcgtggtattgtaaaaacagttaaatctgctaaaaagattatagataga
aaagagcctgtagtatgggatattttagagaatgtcttaaaaggacatcctgtattatta
aaccgtgctcctacgcttcaccgtctgggtattcaggcattccagcctaaacttatcgaa
ggtaaagcaatacagttacacccattagtatgtactgcatttaacgccgattttgatgga
gatcagatggcggtgcatttaccattaggaccagaggcaatattagaagctcagttatta
atgctggcatctcataatatcttgaatccagcgaatggttcaccggtaaccgttccttca
caggatatggtacttggtctatactatatgacaaaatctcgtagatctacgccagaatta
gagataaaaggtgaagatcttacgttctattctccagaagaagtagttattgcatataac
gaaaaaagacttgatattaatgctaatattaaagtacgtacaaaggatattaatgaagaa
ggagaaatagtaactaagattatagaaactacaacaggtagagttctatttaatgataaa
gttcctgaaaaagcaggttatattaatgaagttttaactaaaaaatctcttagagatatt
attggtggaattcttaaagtaactagtgttcctgaaacggctgctttcttggatgaaata
aaaactctagggtataattttgcatttagaggtggtttatcatttagtttaggagatatt
attattcctaaagaaaaacacaccatgattgctgatgcaaattcgcaagtagataatatt
gttgcgaattataacatgggacttattacgaataatgaacgttacaatcaggttattgat
atatggacttctacgaatgcagaattgacagaattgtcaatgaaacgtattagagaagat
caacaaggatttaactctgtatatatgatgcttgattctggagcaaggggatctaaagaa
cagattcgtcagttaaccggaatgcgtggattaatggctaagcctaagaaatcgaattct
gcaggtggagaaattattgagaatccaattctttctaactttaaagaaggtctttcaatt
ttagaatactttatctctactcacggtgcacgtaaaggtcttgcggatacggctcttaaa
acggcagatgcagggtacttaactcgtcgtttagtagatgttgctcaagatgttattgtt
aatatcgaagattgtggcacgcttagaggtgttgaagttgctccgttaaagaaaaacgaa
gagattatcgaaggccttggagcgagaatagtaggtagaacagcattaacagatgtgatc
aacccactaacgcaagaggtactaattgaggctggaacagaaatagatgatgcaacggct
aaacttattgaaaactcaccagtagaaactgttgaagtacgttctgcacttacttgtgaa
gctaagaaaggaatttgtgtaaaatgttatggtcgtaaccttgctactggtaaaacggta
caaagaggtgaagctgtaggtgttgtagctgcccagtcaattggagaaccaggtacacag
cttacgttacgtacattccacgtaggaggtattgcaggtaacatctctgaagataaccaa
ttaaaatctaaatttgctggtaaagcagaaatagaagaacttaagacggttaaaggagaa
gataatgatggaaaagaaattgatgtagtaatttctcgtacttctgaagtaaaagttata
gatccaaagacaaaaattgtattaagtactaacctaatcccttatggatcacagttgttc
attaaagatggtgataagttagaagctgatcaggttatctgtcagtgggatccatataat
ggtgttattatttcagaatttgctggtaaggtaaaatatgaaaatatagagcaaggtatt
acatatcaagtagagattgatgaacaaactggtttccaggaaaaagtaatttctgaatct
cgtgataagaaaaagatacctacacttttaattatgggtaaaggagacgaagttcttcgt
tcttataaccttccggtaggggctcacttaatggtggatgataatgataagattggagtt
ggtaaaattttagttaagattcctcgtaaatctgcaaaagcgggtgatattacaggaggt
cttcctagagttaccgagttgtttgaagcgcgtaatccatctaacccagcagtggttagt
gagattgatggtgttgtttcttttggtaagatcaaacgtggtaatcgtgagatcatagta
gaatcaagaataggtgagatcaagaagtacttggttaagctttctaatcagattcttgtt
caggaaaatgattatgtacgtgcaggaatgccgttgtctgatggttcaactacaccagaa
gatattcttaagattaaaggcccatctgcggtacaacaataccttgtaaacgaagtacaa
gaagtatatagattacaaggggtgaaaattaacgataagcattttgaggtagtagtacgt
caaatgatgcgtaaagttagaattcaagatccgggagatactattttcttagaaaatcaa
ctagttcataaatcagattttatcgaagaaaacgatgagattttcggaatgaaagtagtt
gaagatgctggagatagtgctaaccttaaagcaggacaaattatttcccctcgtgattta
agagatgaaaattctgtattgcgtagagatgataagaatcttgttactgcaagagacgta
tcgccagcgactgcaactccaatactacaaggtattacaagagcatcgctacagacgaaa
tcgtttatatctgctgcgtcattccaggaaactaccaaagtattaaacgaagctgcagta
agcggaaaagttgatacgctagaaggtcttaaagaaaatgtaattgttggtcacagaatt
ccagcaggtacaggtatgagagattatgaaagcatcatcgtaggatcaaatgaagaattt
gaagagcgaatggaacagcgacaagaagtaaattataactaa
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