Aquimarina sp. AD10: D1816_14330
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Entry
D1816_14330 CDS
T05712
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aqd
Aquimarina sp. AD10
Pathway
aqd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aqd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
D1816_14330 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aqd03400
]
D1816_14330 (mfd)
Enzymes [BR:
aqd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D1816_14330 (mfd)
DNA repair and recombination proteins [BR:
aqd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
D1816_14330 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AXT61479
UniProt:
A0A3A9V519
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All DBs
Position
3437432..3440779
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AA seq
1115 aa
AA seq
DB search
MSTTLISQTISQSLQVQKLGKAIAQSEAKVHLQGLLGSSLSFAITAIFETSEQPFLCIFN
DKEEAAYYLNDLEQLLGDKNVLFYPGSYRRPYQIEETDNANVLLRAEVLNRINSRKKPAL
IVTYPDALFEKVVTRKELEKNTLKISVNDTLSLDFINEVLFEYQFQRVDFVTEPGEFSVR
GGIVDVFSFSNDKPYRIEFFGDEVDSIRTFDVETQLSTDQIKKITVIPNVENKAMQETRE
SFLKYIASKTVVLAKDIDLLSARIDKNFEKAEVAFKTLSEDIKHGKPNELFATSELIKKQ
LLEFTLVEIGDRPFTKADYAIKFDTKPQPSFNKQFDLLIQNLNENHENGYKNYIFCVSEQ
QAKRFHDIFDDADLDVKQYETIVFSAFQGFIDHNQKIACYTDHQIFERYHKFNLKNGYAK
KQAITLKELTNLEVGDYVTHIDHGIGKFGGLQKIDVEGKKQEAIKLIYGERDVLYLSIHS
LHKISKYNGKDGKPPQIYKLGSKAWKTLKQKTKARVKHIAFNLIQLYAKRKLQKGFQYNP
DSYLQHELEASFIYEDTPDQSTATEAVKSDMESERPMDRLICGDVGFGKTEVAIRAAFKA
VDNGKQVAILVPTTILAFQHAKTFRERLKDFPVTVDYVNRFRTAKQKRETLEELASGKVD
IIIGTHQLVNKSVKFKDLGLLVIDEEQKFGVSVKDKLKTIKENVDTLTLTATPIPRTLQF
SLMAARDLSTITTPPPNRYPIETNVIRFNEETIRDAISYEIQRGGQVYFIHNRIENIKEV
AGMVQRLVPDAKVGIGHGQMEGKKLESLMLSFMNGEFDVLISTTIVESGLDVPNANTIFI
NNANNFGLSDLHQMRGRVGRSNKKAFCYFITPPYSAMTEDARKRITALEQFSELGSGFNI
AMKDLEIRGAGDLLGGEQSGFINEIGFDTYQKILNEAIEELKENEFAELYEDEAKEKVYL
KDTQIDTDFELLFPDDYINNITERLNLYTELNGIKDEEALQNYELRLIDRFGELPDQALD
LLNSVRIKWIATGIGLEKVILKQNKLIGYFISDQQSGFYQTPAFSLVLQFVQKNPGVCKM
KEKQTRNGLRLLLTFEHIKSVDKALKVLQPLKLEN
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
gtgagcactactttaatctcgcaaaccatttcacagtctctgcaagtacagaaactggga
aaagctattgcccaatctgaagcaaaagtacatttacaaggcctactaggatcttctctt
tcttttgcaattactgccatttttgaaactagtgaacaaccctttttatgcatttttaac
gataaagaagaggcagcatattatctaaatgatcttgaacaattactgggtgacaaaaat
gttttgttctatccaggtagttatcgtagaccatatcaaatagaagaaaccgataatgct
aatgtactacttagagcagaagttcttaaccgaattaattctcgcaaaaaaccagcttta
atcgttacctatcccgatgctctattcgaaaaagtagttacccgaaaggaactggaaaaa
aatacactaaaaataagcgtaaatgacaccttatctcttgattttataaatgaagtttta
tttgaatatcaatttcaaagagtagattttgtaacagaaccaggagaattttcggtacgt
ggtgggattgtagacgttttttcttttagtaatgacaaaccttatcgaatcgagtttttt
ggagacgaagtcgatagtataagaacatttgatgtagaaactcaattatctacagatcaa
attaaaaaaattacggtaattccaaatgtcgaaaataaagccatgcaagaaactcgagag
agctttttaaaatatattgcttcaaaaacggtagttcttgccaaggatattgatttactt
tctgctagaattgataaaaattttgaaaaagccgaagtggcttttaaaacattatcagaa
gatataaaacatggtaaaccaaacgaactttttgccacttcagaacttattaaaaaacaa
ttattagagtttacattagtagaaattggagaccgaccttttaccaaagcagattatgcc
ataaaatttgatactaagcctcaaccatcgtttaataaacagtttgatttactgattcaa
aatctaaatgaaaatcatgaaaatggatataagaattatatcttctgtgtgagtgagcag
caagcaaaacgttttcatgatatttttgatgatgccgatcttgatgtaaaacaatatgaa
accattgttttttctgcttttcaaggttttatagatcacaatcaaaagattgcttgttat
accgaccatcagatatttgagcgttatcacaagttcaatctaaaaaatggatacgccaaa
aaacaagctattacccttaaagagcttacaaatcttgaggttggtgattatgtcacccat
atcgatcatggaataggaaaatttggaggtctgcaaaaaatagatgttgaaggtaaaaag
caagaggctataaaattaatttacggagaaagggatgtactatacttgagcattcattct
ctgcataaaatttctaagtataacggtaaggatggtaaacctcctcaaatttataagtta
ggttcaaaagcttggaaaactcttaaacaaaaaaccaaagctcgtgtaaaacatatagcg
tttaacctcattcagctatatgcaaagcgaaagttacaaaaagggtttcagtataaccct
gatagctatttacaacatgaacttgaggcttcttttatctatgaagacactcccgatcaa
agtaccgccacagaagctgtaaaatcggatatggaaagtgaacgcccgatggatcgcttg
atatgtggagatgttggatttggtaagacagaagttgctatacgagctgcatttaaggcc
gttgataatggtaaacaagtcgctattcttgttcctactacaattcttgcttttcaacat
gcaaaaacatttagagaacgtcttaaagatttcccggtaacagtagattatgtaaaccgt
ttccgtacagctaaacaaaaaagagaaacattagaagaattagcatcaggaaaagttgat
attattattggtacgcatcaactggtcaataaaagtgtaaaatttaaagatcttggatta
ttggtgatcgatgaagaacaaaaatttggtgtatctgtaaaagacaagcttaaaacgatt
aaagaaaatgtagatacactaacattaaccgccacccctatcccgcgtacattacaattt
agtttaatggcagcccgcgatttatcaacaattactactccccctcctaatcgatatcca
atagaaaccaatgtgatacgatttaacgaagaaactattagagatgccattagctatgaa
atacaacgtggtggacaagtatattttattcataatagaattgaaaatataaaagaagta
gcaggtatggtacaacgtcttgttcctgatgctaaagtaggtattggacatggacaaatg
gaaggaaaaaaattagaaagtttaatgctttcttttatgaatggtgaatttgatgtttta
atttctactactattgtggagagtggcttagacgtgccaaatgctaatactatttttatt
aataatgccaataattttggactttctgatttgcatcaaatgcgaggtcgtgtgggtagg
agcaataaaaaagcattctgttattttatcacacctccttattctgccatgacagaagat
gcacgcaagcgtattactgctctagaacaattttctgaacttggaagtggatttaacatc
gctatgaaagatcttgagatacgaggtgcaggagatttgttgggtggtgaacaaagtggt
tttattaatgaaattggatttgatacttatcagaaaattctaaatgaagctatcgaagaa
cttaaagaaaatgagtttgccgaactttatgaagatgaagccaaagaaaaagtatatcta
aaagatacccaaattgataccgattttgaactgttgtttcccgatgattacattaacaat
attacagaacgattaaatctttataccgaacttaacggaataaaagatgaagaagccttg
caaaactatgaattgagattaattgatcgttttggcgaactaccagaccaagcgttagat
ttattaaattctgttagaataaaatggattgcaaccggcataggcttggaaaaagtaatt
ctgaaacaaaacaaattaattggatattttattagtgatcaacaatctggtttttaccag
actcctgcgttctctttagtacttcaatttgtacaaaagaatcctggtgtttgtaaaatg
aaagaaaaacaaaccagaaatgggttacgcttattactaacttttgaacacataaaatct
gtggacaaagcattaaaggttttacaaccactaaagcttgagaattag
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