Aquimarina sp. ERC-38: NBT05_02020
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Entry
NBT05_02020 CDS
T09583
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
aqe
Aquimarina sp. ERC-38
Pathway
aqe02020
Two-component system
aqe02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
aqe00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
NBT05_02020 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NBT05_02020 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aqe03021
]
NBT05_02020 (rpoN)
Transcription machinery [BR:
aqe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NBT05_02020 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
LacI
SF3b1
HTH_12
MarR
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
UZO81263
LinkDB
All DBs
Position
464640..466100
Genome browser
AA seq
486 aa
AA seq
DB search
MLKQQLNFKLSQKLSPQQIQLMKLIQLPTQAFEQRLKQEMEENPALDSGKEKSDELEDTF
SNENSTEDDYGSEKIETDINVDEYLSDDEIPNYRLNANNYSSDDEEKNVPYASGTSFHQH
LINQLNTYRLNEQEREIAEFLVGSIDESGYIRRPLADIIDDLAFTQNIYTTEEEVEKVLD
IVHQLDPAGVGARSLQECLSIQLHRKETTIPIKLASLIIDNAFDHFSKKHYDKLLAKFDI
TEEQLRESIEEIEHLNPKPGGSYAGNNRIVEHVVPDFTIRIVDGELELTLNGRNAPELHV
SREYNNMLQGYKASKEKSKSQKDAVLFIKQKLDAAKWFIEAVRQRQQTLFVTMSAIMHYQ
KEYFLSGDERNLKPMILKDIADEIGMDVSTVSRVANSKYVDTPYGTKLIKEFFSESMTND
QGEEVSTREIKKILEITIGEEDKRKPLTDEKLAKMLKEKGYPIARRTVAKYREQLDIPVA
RLRKKI
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgttgaaacaacaattaaattttaaactttctcaaaagctctcgcctcaacaaatccag
ctgatgaaattaattcaattgcctacccaggcttttgaacaaaggctaaaacaagaaatg
gaagagaatccggctttggatagcggtaaagagaaaagtgacgaattagaagatactttc
agcaatgaaaactcaaccgaagatgactatggctcagagaaaattgaaacggatattaat
gtagatgagtatttaagtgacgatgaaattcccaattatcgtttaaatgctaataattac
agttcggatgatgaagaaaaaaatgttccttatgcttccggcacttcttttcatcaacat
ttaattaatcagttaaatacatatagactaaatgaacaagaaagggaaatagccgaattt
ctggtgggaagtattgatgaaagcggatatatacgtcgacctttggcagatattattgat
gatcttgcttttactcaaaatatctatactaccgaagaagaagttgaaaaagtactggat
attgttcatcaattagaccctgccggtgtaggtgcacgtagtctgcaagaatgtttatct
atacaattgcatcgtaaagagactaccattcctattaaacttgcctctttaatcatagat
aatgcttttgaccactttagcaagaaacattacgataagttacttgctaaatttgatatt
accgaagaacaattacgggaatctattgaagaaattgaacatttaaatcccaaacccgga
ggttcttatgccggtaacaaccgaattgtagaacatgttgttcccgattttaccattcgt
attgtagatggtgaactggagttgaccttaaatggtcgtaacgccccggaacttcatgtc
tccagagaatacaataacatgctccaggggtataaagcaagtaaagaaaagtcaaaatct
caaaaggatgcggttctttttataaaacaaaaactggatgcggctaaatggtttattgaa
gcggttcgacaacgtcagcaaacgctttttgtaactatgagtgccattatgcattatcaa
aaagaatatttcttaagtggtgatgaacgaaacttaaaacctatgatccttaaagatatt
gccgatgaaatcggaatggatgtaagtacggtatcccgggttgcaaatagtaaatatgta
gatactccttatggaaccaaattaattaaagaatttttctctgaatctatgactaatgat
cagggagaagaagtctccacccgggaaataaagaaaattcttgaaatcaccatcggagaa
gaagataaacgaaaaccacttactgatgagaaactggcaaaaatgctaaaagaaaaaggt
tatcctattgccagaaggactgttgctaagtatagagaacagttagacatccccgtagca
aggttacgaaaaaaaatctag
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