Aquimarina sp. ERC-38: NBT05_03365
Help
Entry
NBT05_03365 CDS
T09583
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
aqe
Aquimarina sp. ERC-38
Pathway
aqe03030
DNA replication
aqe03430
Mismatch repair
aqe03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
aqe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NBT05_03365 (dnaE)
03430 Mismatch repair
NBT05_03365 (dnaE)
03440 Homologous recombination
NBT05_03365 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aqe03032
]
NBT05_03365 (dnaE)
03400 DNA repair and recombination proteins [BR:
aqe03400
]
NBT05_03365 (dnaE)
Enzymes [BR:
aqe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NBT05_03365 (dnaE)
DNA replication proteins [BR:
aqe03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NBT05_03365 (dnaE)
DNA repair and recombination proteins [BR:
aqe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NBT05_03365 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
RNase_T
tRNA_anti-codon
GLUCM-like_C
Intimin_C
HHH_3
Motif
Other DBs
NCBI-ProteinID:
UZO81520
LinkDB
All DBs
Position
775414..779799
Genome browser
AA seq
1461 aa
AA seq
DB search
MYLIFDTETTGLPKRWDAPVSDTDNWPRCIQIAWQLHDEMGNCIEHQDYLVQPEGFNIPY
DAEKIHGISTELAAQQGIPLTEVLQKFQAALTKTKFIVGQNVGFDVNIMGAEYYRENMDN
VLQSLPVLDTCTETTAQLCKIPGGRGGKFKLPTLTELHQYLFGEAFNEAHNATADVEATT
RCFFELVRKQVYTPEKLDVSPQYFKDFQETHPEPIQLIGLRHINLKKASQELLKNSQKDK
KPKVSQIDLLKNKEALRDAPFAHLHNHTQFSVLQSTTSVKDLVDAAAKHQMPAVAMTDHA
NMMGAFHFVQAVSTHNKKVKAALEEAENENAISELSYIKPIVGCEFFVCENHKDKSRKDN
GYQVVFLAKNKNGYHNLAKMSSIGFVDGFYYVPRIDREVVKAYKEDLIVLTGNLYGEVPS
KILNVGEKQAEEALTWWQREFGEDLYIEIMRHNQEDENRINPVLLNLAKKHGIKTVASNN
TYYCDKEDANAHDILLCVKDGEKQATPIGRGRGYRYGLPNQEYYFKSSEEIKSLFKDIPD
AIFNVQEVIDKIEPFELARDVLLPAFDIPEQFQSEKDHVDGGKRGENAYLRHITYEGAKK
RYGEITPEITERIDFELSVIENTGYPGYFLIVEDFIRAARDMGVSVGPGRGSAAGSVVAY
CLWITNLDPIKYDLLFERFLNPDRISMPDIDIDFDDEGRSRVMDYVIKKYGANQVAQIIT
YGTMAAKSSIRDTARVLDLPLGDADRISKLVPNFTKLDKIFSSEEAALKKSFRSDELSKV
LELLNISQSGNLEGETLNQARVLEGSVRNTGIHACGVIITPDDITKFVPVALAKDSDMYC
TQFDNSVVENAGLLKMDFLGLKTLTLIKDTVKIVKAKHGIELDPENFPLDDEKTYALFQR
GETVGVFQYESPGMQKYMKELKPTVFADLIAMNALYRPGPLEYIPSFINRKHGTEPINYD
LEACEEYLQETYGITVYQEQVMLLSQKLANFTKGEADVLRKAMGKKQKAVLDKMKPKFIS
QASANGHAEDKLEKIWKDWEAFAAYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAAVLSN
NMNDIKQVTFFMEECKRMKLEVLGPDINESYRKFSVNKDGAVRFGMGAIKGVGTNAVETI
VENRKKNGPYTSIFDFAKRVDLRAANKKAFESLALAGGFDCFDTTHRAQYFYHDGDDTFF
LEKAIKYGAKYQENENSSQVSLFGDSSEVQIPEPVIPPCEEWGTMEKLAKEKEVVGIYIS
GHPLDDFKYEMKYFCNGTLSHFLDLEKIINREIAFGGVISSVEHRTSKNGKGWATFIVED
YQSAHEFRIFGEDYLKHRPFLVKNTFVFAKAYIKEGWVNRDTGKKGEPRIQFNSFQLLHD
VMEAHAKKLTLHLNIDDLSENGISTLKNTLALHKGSHSLSFVVHEKEEAIQLPMPSRKQK
VQISPILLNNLEDLSIAYKLN
NT seq
4386 nt
NT seq
+upstream
nt +downstream
nt
atgtatttgatttttgacacggaaactacaggattacctaagcgatgggatgccccggta
agtgatacggataactggcccagatgtatacagattgcctggcagctacatgatgaaatg
ggaaactgtatagaacatcaggactacctggtacaaccggagggttttaacattccttat
gacgctgaaaaaatccatgggatttctacggagttagctgcacaacaaggaattccttta
accgaagtacttcaaaaatttcaggcagctttaacaaaaactaaatttatagtaggtcaa
aatgtcggttttgatgtcaatatcatgggagccgaatattaccgggaaaatatggataac
gtattgcaatctttaccggttcttgatacttgtacggaaaccaccgcacaattatgtaaa
atcccgggtggtagaggaggtaagtttaaacttccaacacttacggagttgcaccaatat
ttatttggcgaagcttttaatgaagcacataatgctacggcagatgtagaggcaactacc
cgttgtttttttgaattagtccgtaaacaggtatacactcctgaaaaactggatgtcagt
ccgcaatattttaaggattttcaggaaacccatccggaacccattcaattaataggctta
cggcatattaatttaaaaaaagcttcacaagaattactcaaaaattctcaaaaagataaa
aagccaaaggtttctcaaatcgaccttcttaaaaataaagaagctttacgggatgccccg
tttgcccatttacataaccacacccaattctccgtacttcaatccactactagtgtaaag
gatttggttgacgcagcagcaaagcatcaaatgccagcagttgccatgacggatcatgct
aatatgatgggtgcttttcattttgtacaggcagtttctacccataataaaaaggtaaaa
gcagccctggaggaagcagaaaatgagaatgcaattagcgaactgtcttatattaaaccc
attgtaggttgcgaattttttgtttgtgaaaaccataaggataaaagtagaaaagacaac
gggtaccaggtggtgtttttagccaaaaataaaaatggataccacaacctggcaaaaatg
tcctcaattgggtttgtagatggattttattatgttccccggattgaccgggaggtggta
aaagcctataaagaagacttaattgtacttaccggaaatctttacggcgaagtacctagt
aaaattttaaatgttggtgaaaaacaagcagaagaagctctgacctggtggcaacgggaa
tttggcgaagacctgtatattgaaattatgcgccataaccaggaagatgaaaaccggatc
aacccggtactacttaatttggcaaaaaaacacggtattaaaacagtagcatctaataat
acctattactgtgacaaagaagatgccaatgcacatgatattttactttgtgtaaaagac
ggagaaaagcaagctactcctatcggccgtggtcgcggatatcggtacggattacctaac
caggagtattattttaaatcttcagaagaaataaagagcttatttaaagatattcctgat
gctatttttaacgttcaggaggttatcgataagattgaaccttttgaattagcaagagat
gttttattaccggcttttgatatccctgaacaatttcaatccgaaaaagatcatgtggat
ggcggtaaaagaggtgaaaatgcgtatttacgtcatatcacttatgaaggtgctaaaaaa
agatacggtgagatcactccggaaattaccgagcgtattgactttgaactttcggttatt
gagaatacgggatatcccggttactttttaattgtagaagattttatacgcgctgcgagg
gatatgggagtttcagtcggaccaggacggggttctgccgcaggctctgtggtagcctat
tgtttatggattactaatctggaccctatcaaatatgatttactttttgagcgcttttta
aatccggaccgaatcagtatgccggatattgatattgattttgatgatgaaggccgaagc
cgggtaatggactatgtaattaaaaaatacggcgctaaccaggtagcccagattattacc
tacggaactatggctgccaaatcctccattcgggatacggcaagggtgctggatttaccc
ctgggagatgccgatcgaatctcaaaactggttcctaattttaccaaacttgataaaata
tttagtagtgaagaagctgctttaaagaagtcttttagaagtgatgaactttctaaagta
ctggaacttttaaatatttcgcaaagcggaaacctggaaggcgaaactttaaatcaggca
cgggtactggaaggttctgtgagaaataccggaatacatgcctgtggggtcattatcacc
ccggatgatattaccaagttcgtaccggtagccctggcaaaagattctgacatgtactgc
acgcagttcgacaactcggtggtagaaaatgccggtttgttgaagatggattttttgggg
ctaaagacgctgacactgattaaagatacggtcaaaattgtaaaggcaaagcacggcatt
gaactggatcctgagaactttccactagatgatgaaaaaacctatgctttgttccaaaga
ggggaaacggtaggcgtgtttcaatatgaatcgcccgggatgcaaaaatacatgaaggaa
ttaaagcctacggtttttgcagaccttattgccatgaacgctttgtaccgcccgggaccc
ttagaatatatccccagttttattaacaggaaacacggtacggaacctattaattatgat
cttgaagcatgcgaagaatatttacaggaaacttatgggatcacggtatatcaggagcaa
gtgatgttactatcacagaaactggcaaattttaccaaaggtgaagcggatgtactccgt
aaagccatgggaaaaaagcaaaaagcagttttagataagatgaagcctaagtttatttct
caagcctctgcaaacggacatgctgaagataaactggaaaaaatctggaaggattgggaa
gctttcgcagcctatgcttttaataaatcccactctacctgctacgcctggattgcttac
cagacggcttacttaaaagcccactacccagccgaatatatggcggcagtactttctaat
aatatgaatgacataaaacaggttacgttttttatggaagaatgtaagcgaatgaagtta
gaagtactaggccctgatatcaacgaatcttaccgaaaattctcggtgaataaagatggt
gcggtacgttttggtatgggggctatcaaaggagtgggtactaatgcggtagaaaccatc
gttgaaaaccgaaagaaaaatggtccgtatacttctatttttgattttgcaaaacgggtt
gaccttcgggcggctaataaaaaggcttttgagagtttagccctagccgggggatttgat
tgctttgataccacgcatcgggcgcaatacttttatcatgatggtgatgatacatttttt
ctggaaaaagcaattaaatacggagcaaaataccaggaaaatgaaaattcttcacaagta
agcctgtttggagatagtagcgaagtacagatacctgagccggtcattccaccttgtgaa
gaatggggtactatggaaaaactagccaaagaaaaagaagtagtaggaatttatatctcg
gggcatccgctagatgattttaaatacgaaatgaaatacttttgtaacggtacgctttct
cattttctggatttggaaaaaataattaatagggaaattgcttttgggggcgtgatatct
tcggtagaacatcgaacttcaaaaaacgggaaaggctgggctacttttattgttgaagat
taccagtctgcccatgagttccgcatttttggagaagactatttaaaacaccgtcctttt
ttagttaaaaacacctttgtgtttgctaaggcatatatcaaagaaggttgggttaaccgg
gatacaggtaaaaaaggagaaccccgaattcaatttaatagttttcaattgttacacgat
gtgatggaagcacatgctaaaaagttgaccttacaccttaatattgacgatctatctgaa
aacggaatttccactttaaaaaataccttagcgctacataaaggaagtcatagcctaagc
tttgtggtacatgaaaaagaagaagcgattcaattacccatgcccagtagaaagcagaaa
gtacaaatttcgcccatattgctaaataacttggaggatttatctattgcctataagttg
aattga
DBGET
integrated database retrieval system
