Aquimarina sp. ERC-38: NBT05_04520
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Entry
NBT05_04520 CDS
T09583
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
aqe
Aquimarina sp. ERC-38
Pathway
aqe03410
Base excision repair
aqe03430
Mismatch repair
aqe03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
aqe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
NBT05_04520 (recJ)
03430 Mismatch repair
NBT05_04520 (recJ)
03440 Homologous recombination
NBT05_04520 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aqe03400
]
NBT05_04520 (recJ)
DNA repair and recombination proteins [BR:
aqe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
NBT05_04520 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
NBT05_04520 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NBT05_04520 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
UZO81735
LinkDB
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Position
complement(1042155..1043849)
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AA seq
564 aa
AA seq
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MRWTIKPQPNLNEVQHLSKALGVPDQISRLLVQRDIKTFEEAKAFFRPDLKDLHDPFLMK
DMQKAVDRIVEALQNKERILVYGDYDVDGTTSVALLSSFLETKSSLITTYIPDRYQEGYG
VSYQGIDYASDNDISLIITLDCGIKAIDKVIYAKEKDIDFIICDHHRPGAKIPDAIAVLD
PKREDCPYPYKELCGCGVGFKLIQAITFYLQEPFSNLIPYLDLVATAIAADIVPMTGENR
ILTYHGLRLLNTKPRIGFKALLSSVKKEELTITDVVFIIAPRINAAGRMKHGQHAVMLLK
EEHPETARQYAQEIEHFNSDRRVTDQHTTVEALTQIIENNEEANASTVVYHKAWHKGVIG
IVASRLTETYYRPTVVFTKSGDKLAASVRSVKGFDVYKALQQCADHLEQFGGHKYAAGLT
LYEHQYQDFKNKFEEVVLNTLSTNLKEPEIIIDNTLEFSEITPKLHRILKQFAPFGPGNM
MPVFMTEGVKDTGYGKCVGSDSKHLKATFVKRNSRFNAIGFNLGSKCDFIENQCSCSIAY
TIDENEWNDEITLQLKVKDIKSIL
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgaggtggactataaaaccacaacccaatcttaatgaggtacaacatctttctaaagcc
ctgggagttccggatcagatcagccgtttattagtgcaacgtgacatcaaaacttttgaa
gaagctaaagccttttttcgtccggacttaaaagatctgcacgatccttttttaatgaag
gatatgcaaaaagcagtagatcgtatcgtggaagctttgcaaaataaagaaagaatatta
gtatacggtgattatgatgtagatggaactacctcagtagccctgctgtcttcattttta
gaaaccaaatcttctttaattaccacctatataccagaccggtatcaggaaggttacgga
gtttcttatcaggggatcgattatgcttcggataatgatataagcctaattattacttta
gactgcgggattaaagctattgacaaagtaatttacgcaaaagaaaaagacattgacttt
attatttgtgaccatcatcgtcccggcgctaaaattcctgatgctattgctgtgttagat
cctaaaagagaagattgtccgtacccctataaagaattatgtggttgcggagtaggtttt
aagctgattcaggccatcaccttttatttacaagaacctttttcaaatttgattccttac
ctggatttggttgcaactgctattgctgcggatattgtacctatgaccggtgaaaatagg
attttgacctatcatggattaaggttactaaatacaaaacccagaataggctttaaagca
cttttaagttcggtaaagaaagaagaactcactattactgatgtggtttttatcattgcc
ccacgaattaatgctgccggacgtatgaaacacggtcagcatgcagtcatgcttttaaaa
gaagaacatccggaaactgcaaggcagtatgcacaagaaatcgaacattttaatagtgac
cggcgtgttacggatcagcacacgactgtagaggctttgacccaaattatagaaaataat
gaagaagcaaatgcatccaccgtagtgtatcacaaagcatggcataagggggttattggt
attgtagcttcccgattaacagaaacctactatcgacctacggttgtttttactaaaagc
ggagataaactagcagcttcagtacggtcagttaaaggttttgatgtctacaaagcttta
caacaatgtgcagatcatttggaacaattcggaggacataaatatgccgcgggattaact
ctatatgaacaccaatatcaagattttaaaaataaatttgaagaagtagttttaaatacg
ttatctactaacctaaaagaacctgaaattatcattgataatacattagaattttctgaa
atcacgcctaaactacaccgtattctaaagcaatttgcaccatttggccccggtaatatg
atgccggtttttatgacggagggtgttaaagataccggatatggtaaatgtgtgggatct
gattcaaaacatttaaaagcaacatttgtaaaaagaaatagtcgttttaatgcaatcggg
tttaatttagggtcgaaatgcgattttatagaaaatcaatgttcatgttctattgcttat
accattgatgaaaatgaatggaacgatgagattacccttcaactaaaagtaaaagatatt
aagtcaattttataa
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