Aquimarina sp. ERC-38: NBT05_07600
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Entry
NBT05_07600 CDS
T09583
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
aqe
Aquimarina sp. ERC-38
Pathway
aqe03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
aqe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
NBT05_07600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aqe03400
]
NBT05_07600
Enzymes [BR:
aqe01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
NBT05_07600
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
NBT05_07600
DNA repair and recombination proteins [BR:
aqe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
NBT05_07600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
NFACT_N
Ribosomal_S13
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
UZO82330
LinkDB
All DBs
Position
complement(1812399..1813184)
Genome browser
AA seq
261 aa
AA seq
DB search
MPELPEVYGYQQYLENTALHQKIVAFDCRDARLLKKPLADFETSLIGSEFTGTQRIGKYL
FVKTSGKKIVLMHFGMTGKPTYYKEAEDRPKFGHIVLTFENGFHFAFENKRKFGRWDLVD
TIEAYQKEHKLSKDTRDISLEEFKAALRNRKTAIKKVIMDQSVTAGVGNWIADDVLYQAQ
IHPEKNVADLSEEEIIRVYTKLQYVIETAIDLEAHYEDFPEQFMMRKRREIGADCHYTNG
KIEKIVVGGRSTYYSPKWQHL
NT seq
786 nt
NT seq
+upstream
nt +downstream
nt
atgccggaattacctgaagtatatggatatcaacaatatctggaaaacaccgcccttcat
caaaaaattgtggcttttgattgtcgggacgcacgattattaaaaaaacccttagctgat
tttgaaacatctttaatcggctcagaatttacaggtactcaacgtatcgggaagtatcta
tttgtaaaaacctccggtaagaaaatagtattgatgcattttgggatgaccggtaagcct
acctactataaagaagcagaagatcgtcctaaattcgggcatattgttttgacttttgaa
aacggttttcactttgcttttgaaaacaaaagaaaatttggtcgttgggatctggtagat
actatcgaggcttatcaaaaagaacataagttaagtaaagatacccgggatattagctta
gaagaattcaaggcagccctccggaatcggaaaacagccattaaaaaagtaattatggat
caaagtgttaccgccggggttggtaactggattgcagatgatgtattataccaggctcaa
attcacccggaaaagaatgttgcggatttgagtgaagaagaaatcatacgggtgtatact
aaattacaatatgttatagaaactgctattgatcttgaagctcattatgaagattttcct
gagcagtttatgatgcgaaaaagacgtgagattggtgctgactgtcattatacgaacggt
aagattgaaaagatagttgtaggtggaagatccacgtactattctccgaagtggcaacac
ttgtaa
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