Aquimarina sp. ERC-38: NBT05_10550
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Entry
NBT05_10550 CDS
T09583
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
aqe
Aquimarina sp. ERC-38
Pathway
aqe03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aqe00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NBT05_10550 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aqe03021
]
NBT05_10550 (rpoC)
03400 DNA repair and recombination proteins [BR:
aqe03400
]
NBT05_10550 (rpoC)
Enzymes [BR:
aqe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NBT05_10550 (rpoC)
Transcription machinery [BR:
aqe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NBT05_10550 (rpoC)
DNA repair and recombination proteins [BR:
aqe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NBT05_10550 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
UZO79405
LinkDB
All DBs
Position
2533846..2538147
Genome browser
AA seq
1433 aa
AA seq
DB search
MARNNDKNTVKKFDKISIGLASPESILAASQGEVLKPETINYRTHKPERDGLFCERIFGP
VKDFECACGKYKRIRYKGIVCDRCGVEVTEKKVRRDRVGHINLVVPVAHIWYFRSLPNKI
GYLLGLPSKKLDMIIYYERYVVIQPGIAKNEEGEAVKKMDFLTEEEYLNILDSLPQENLY
LEDTDPNKFIAKMGAECLIEILRRIDLDELSYELRHKANNETSKQRKTEALKRLQVVEAL
RDANKNRENNPEWMILKVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLM
EIKAPEVILRNEKRMLQESVDSLFDNTRKASAVKTDSNRPLKSLSDSLKGKQGRFRQNLL
GKRVDYSARSVIVVGPELKLFECGLPKNMAAELYKPFVIRKLIERGIVKTVKSAKKIIDR
KEPVVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADFDG
DQMAVHLPLGPEAILEAQLLMLASHNILNPANGSPVTVPSQDMVLGLYYMTKSRKSTPEL
EIKGEGLTFYSPEEVVIAYNEKQLHINANIKVKTQDLDENGALVSKIIETTTGRVLFNDK
VPEKAGYINEVLTKKSLRDIIGDILKVTSVPETAAFLDEIKTLGYNFAFRGGLSFSLGDI
IIPEEKHTMIADANSQVDNIVANYNMGLITNNERYNQVIDIWTSTNAELTELSMKRIRED
QQGFNSVYMMLDSGARGSKEQIRQLTGMRGLMAKPKKSNSAGGEIIENPILSNFKEGLSI
LEYFISTHGARKGLADTALKTADAGYLTRRLVDVAQDVIVNVEDCGTLRGVEVFPLKKNE
EVIESLSARIVGRTSLMDVIDPITQEVLIEAGQEISDLAAKKVEESAIESVEVRSALTCE
AKKGICVKCYGRNLATGKTVQRGEAVGVVAAQSIGEPGTQLTLRTFHVGGIASNISEENQ
LRSKFAGKAEIEELKTVKGEDSEGNLNDVVISRTSEIKIIEPKTKIVLSTNLIPYGSQLF
IKDGDMLKKDQVICQWDPYNGVIISEFAGKVKYENVEQGITYQVEIDEQTGFQEKVISES
RDKKKIPTLLVMGKGDEVLRSYNLPVGAHLMVDDNDKIKVGKILVKIPRKSAKAGDITGG
LPRVTELFEARNPSNPAVVSEIDGVVSFGKIKRGNREIIVESRIGEIKKYLVKLSNQILV
QENDYVRAGMPLSDGSITPEDILKIKGPSAVQQYLVNEVQEVYRLQGVKINDKHFEVVVR
QMMRKVRIQDPGDTIFLENQLVHKSDFIEENDAIFGMKVVEDAGDSENLKPGQIISLRDL
RDENSILRREDKNLVTARDVTTATATPILQGITRASLQTKSFISAASFQETTKVLNEAAV
SGKVDKLEGLKENVIVGHRIPAGTGMRDYENIIVGSQEEFDERVEQRQEVNFN
NT seq
4302 nt
NT seq
+upstream
nt +downstream
nt
atggctagaaataatgataaaaataccgtaaagaaatttgataaaatttctataggttta
gcttctccggagtcaatattggctgcttctcagggggaggttttaaaacctgaaactatt
aactatcgaacacataaaccggagcgggatggtttgttctgtgagcgtatttttggtcct
gtaaaggattttgaatgtgcctgcggtaaatacaagcgtatccggtataagggaattgtt
tgtgatcgatgtggggtagaagtaacagaaaaaaaggtaagaagggatagagtaggacat
atcaatttggttgttcctgtagctcatatttggtatttccgttcgttacccaataaaata
ggatatttattagggttaccttctaagaaactggatatgattatttactacgaaagatac
gtagtaattcaacctggtattgccaagaatgaagaaggggaagccgttaaaaagatggat
tttctaacggaagaagaatatctgaacattctggatagcttaccacaagaaaatttgtat
ttagaagatacagacccaaataaatttatcgcaaaaatgggggcggaatgccttatcgaa
attttgcgtagaattgatcttgatgaattgtcttacgaattaaggcataaagctaataac
gaaacttcaaagcaacgtaaaacagaagcgttaaagcgtctacaggttgtggaagctctt
agggatgctaataaaaaccgtgaaaataatccggaatggatgatcttaaaagtgattcct
gtaattccgccggaattaagaccattagtacctttagacggaggacgttttgctacttcg
gatttaaatgatctttacagaagggttattataagaaacaatcgtttaaaacgattaatg
gaaattaaagctccggaggtaatattacgtaatgagaagcgtatgttgcaggagtctgta
gattcattgtttgataatacacgtaaagcttctgcagttaaaacagattcgaatcgtccg
ttaaaatcactttccgattctttaaaagggaagcaaggacgtttccgtcaaaatctatta
ggtaagcgagtggattattcagctcgttcggtaattgtagtaggacccgaactaaaatta
ttcgaatgtggtcttcctaaaaatatggctgccgaattatataaaccttttgtcatcaga
aaattgattgaaagaggaattgttaagacggtaaagtcagctaaaaaaattattgataga
aaggaaccggtagtttgggatattttagaaaatgtattaaaaggacatcctgtattattg
aaccgggcgccaactttacaccgtttgggaattcaagcttttcaacctaaattaattgaa
ggaaaagcaattcagcttcacccattggtatgtactgcatttaatgcggattttgatggg
gatcaaatggcggtacatttgcctttaggtccggaagcaattctggaagcgcaactatta
atgctagcttctcataatattttaaatccggctaacggttctccagtaacagttccttct
caggatatggttcttggtttatactatatgaccaaatccagaaaatccacaccggaacta
gaaattaaaggagaaggtcttactttttattcacccgaagaggtagtaattgcctataat
gaaaagcagttgcatatcaacgcgaatattaaagttaaaacacaggacctagatgaaaac
ggagctctggtatcaaaaataatcgagactacaaccggtagagtattatttaacgataaa
gttccggaaaaagcaggttatattaatgaagtactgactaaaaaatccttaagagatatt
attggggatattttaaaagtaaccagtgtgccggaaaccgcagcatttcttgatgaaatt
aagactttaggatataatttcgcctttagaggtggattatcttttagtttaggggatatt
attattcctgaagaaaagcataccatgattgccgatgcaaatagccaggtagataatatt
gtagctaactacaatatggggcttattacaaataatgagcgatataaccaggttattgac
atatggacttctactaatgcagagttaacagaattatctatgaagcgtatccgtgaggat
caacaaggattcaattctgtatatatgatgcttgattcgggggcaaggggatccaaagaa
caaatccgacagttaacgggtatgcgtggattaatggcaaaaccgaaaaaatcgaattct
gccggaggagaaattattgaaaatccgattctttccaattttaaagaaggtctttctatt
ttagaatactttatctcaacccatggtgcccgtaaaggtttggcagatactgctttaaag
acggcagatgctggatatcttacaagacgactagtagatgtagcgcaagatgtaattgtt
aatgttgaagactgtggtaccttaagaggtgtggaagtctttccgttaaaaaagaatgaa
gaggttattgaatcattaagtgcacgaattgtaggtagaacttctttaatggatgtcatt
gaccctataactcaagaggtacttattgaagccggacaggaaatttcagatttagccgcc
aaaaaagtggaagagtcagcgattgaatccgtagaagtaagatcagcattgacttgcgaa
gctaaaaaaggtatttgcgtgaaatgctatggtcgaaaccttgcaaccggtaaaacggta
caacgaggtgaagcagtaggagttgttgcggcacaatctattggagagcccggaacacag
cttactttaagaacttttcacgtaggaggtatcgccagtaacatatccgaagaaaaccaa
ttgcgttccaaatttgccggtaaagcggaaattgaagaattaaaaacggttaaaggagag
gatagcgaaggaaatctgaacgatgtagtaatatcacgaacttctgaaattaaaataatt
gagccgaagactaagattgttcttagtaccaatttaataccttacggttctcagttattc
atcaaggatggtgacatgctaaagaaagatcaggttatttgtcagtgggatccttataat
ggggttataatttcggaatttgccggaaaggtaaagtatgaaaatgtagaacaaggaatt
acatatcaagttgaaattgatgaacaaaccggtttccaggagaaagtaatttcagaatcc
cgtgataagaaaaaaatccctacgctattagtaatgggtaaaggtgatgaagtactacgt
tcttacaatttacctgttggagcccatttaatggtcgatgataatgataagatcaaagtt
ggtaaaattttagtaaaaattcctagaaaatcagctaaagccggggatattaccggaggt
ctgccaagagtaaccgaattatttgaggcacgtaatccttcaaatcctgcggtagtatca
gaaatcgatggagttgtatcttttggtaaaatcaaaaggggtaacagagagattatcgta
gaatcaagaataggtgagatcaaaaagtacctggttaaactttctaatcagattttagta
caggaaaatgattatgtccgtgcaggaatgccattatcagacgggtctattaccccagaa
gatattttaaaaattaaagggccttctgcagttcaacagtacttggtaaatgaagtacaa
gaagtttaccgattacaaggagtgaagattaatgataaacactttgaagtcgtagtacgg
caaatgatgcgtaaagtacgtattcaagatccaggagatactattttcttagaaaatcaa
ctagttcataaatctgactttattgaagaaaatgatgctatttttggaatgaaagtagtt
gaagatgcaggggatagtgaaaacttgaaaccaggacaaattatttcacttcgtgattta
agagatgaaaattctattttacgaagagaagataaaaatctggtcacggcaagagatgta
actaccgccacggcaactccgatacttcagggtattacaagggcttcgttacagactaaa
tcctttatatctgcagcctctttccaggaaactactaaggtattaaacgaagctgcggta
agtggtaaagttgataaattagaagggcttaaagagaatgtaatcgtaggtcatagaatt
ccggctggtacgggtatgagggactacgaaaatattattgtaggttctcaagaggaattt
gatgaacgcgtagaacaaaggcaagaagttaattttaattaa
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