Aquimarina sp. ERC-38: NBT05_12615
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Entry
NBT05_12615 CDS
T09583
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
aqe
Aquimarina sp. ERC-38
Pathway
aqe03420
Nucleotide excision repair
aqe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aqe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NBT05_12615
03430 Mismatch repair
NBT05_12615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aqe03400
]
NBT05_12615
Enzymes [BR:
aqe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NBT05_12615
DNA repair and recombination proteins [BR:
aqe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NBT05_12615
MMR (mismatch excision repair)
Other MMR factors
NBT05_12615
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
Viral_helicase1
ResIII
AAA_11
Motif
Other DBs
NCBI-ProteinID:
UZO79791
LinkDB
All DBs
Position
3033223..3035553
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AA seq
776 aa
AA seq
DB search
MEDYIQELNDAQRAPVLQKDGPMIVIAGAGSGKTRVLTYRIAHLMHQGVDPFNILALTFT
NKAAREMKKRIAAIAGASETKNLWMGTFHSVFAKILRIEADRLGYPSNFTIYDTQDSQRL
ISSIIKEMGLDKDVYKYKQVYSRISSYKNSLITVKAYFQNGELMEADAMAKRPRMGDIYQ
NYVDRCFKAGAMDFDDLLLKTNELLNRFPEVLAKYQNRFRYILVDEYQDTNHSQYLIVRA
LSDKFQNICVVGDDAQSIYAFRGANINNILNFQKDYDNVQQYRLEQNYRSTKNIVKAANS
IIDKNKTKLDKVVWTANDDGPKIIVNRLLTDGDEGRFVASSIFDNQMQHQLTSGNFAILY
RTNAQSRAMEDALRKRDIKYRIFGGLSFYQRKEIKDVLAYLRLIINPKDEEALKRVINYP
ARGIGATTIDKLVVAANHYNRSIFEVMENLDKIDLKINSGTKNRLENFVTMIKSFQVTNQ
SVDAFTLAETVAKQTGLLQELKKDGTPEGIARIENIEELLNGIRDFVEGQKEIVDATGNL
AEFLEDVALATDMDQDTGDDDRVALMTIHLAKGLEFPFVYIVGMEEDLFPSGMSMNTRAE
LEEERRLFYVALTRAEKQAYLTYTQSRYRWGKLIDAEPSRFIEEINPEYIDYLTPVEEYR
YKPLMDTDIFGEVDKSKLRLKKPVSSSPPSSFKPSEEQLRKLRKIRPEHSSSSPTRGAIT
LDENLKEGATVEHVRFGRGKIIKVEGVGQDKKAEINFDTGGIKKLLLRFAKLKLIE
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
ttggaagattatattcaggaattaaatgatgcacaacgggcacccgttcttcaaaaagac
ggtcctatgattgtaattgcaggtgcaggttcgggtaaaacccgggtgttaacctatcgc
attgcacatttaatgcaccagggggtagacccctttaatatcttagcacttacatttacg
aataaagcagctcgtgaaatgaaaaagcggattgctgccatagctggtgccagtgaaact
aaaaatctttggatgggtacgtttcactctgtttttgctaaaattttacgaatcgaagca
gatcggttggggtatccttctaattttacaatttatgatacacaagattcccagcgttta
atttcttccattattaaagaaatgggtttggacaaagatgtgtataaatacaagcaggta
tattccagaatatcttcttataagaacagcttgatcacggttaaagcctatttccagaat
ggagaattgatggaggcagatgcgatggcaaaacggcctcggatgggagatatttatcaa
aattacgtagaccgttgttttaaggcgggtgctatggattttgatgatttattattaaaa
acgaatgagctattaaaccgttttccggaagtactggctaaatatcaaaatcgattccga
tatatcctggtagatgagtaccaggataccaatcattctcaatatttaatcgtcagagca
ttatccgataaattccaaaacatctgcgtagtaggtgatgatgcacaaagtatttatgcc
tttagaggtgcaaatattaataatattctgaattttcaaaaggactacgataatgtacaa
cagtaccgtctcgaacagaattaccgatctactaaaaatattgtaaaagcagctaattca
attattgataagaataaaaccaaactggataaggtagtttggacggccaatgacgacgga
cccaagattattgtcaatcgattactaacagatggtgatgaaggaaggtttgtggctagt
tctatttttgataatcagatgcaacaccaactgacgagtggtaattttgcaattttatac
cggacaaatgcacaatcacgtgcaatggaagacgcacttcggaaaagggatattaaatac
cggattttcggcggattgtccttttaccaacgtaaagaaattaaagatgtattggcatac
ttacgattgattattaacccaaaggatgaagaagctttaaaacgggtgatcaattatcct
gcccggggaataggagctaccaccatagataaactggtagttgcagccaaccattacaac
cgttccatttttgaagtaatggaaaacttggataagattgatcttaaaatcaatagtggc
acaaaaaatcggctggaaaattttgtgactatgattaaaagttttcaggttactaatcaa
tctgtagatgcctttacactagcggaaacagtggcaaaacaaaccggtttgctacaggaa
ttaaagaaagacggtacacctgaaggaattgctcggattgaaaatattgaagaattatta
aacggtatccgtgattttgtagagggacaaaaagaaattgtggatgcaaccggtaattta
gccgaatttctggaggatgtagccttagctactgatatggatcaggacaccggagatgat
gatcgggtagcattgatgaccatccatttagcaaaaggtctggaatttccgtttgtatat
attgttggaatggaagaagatctttttccctccggaatgagtatgaatacccgtgccgaa
ttggaagaagaacggcgtttattctatgtagcccttacccgggcagaaaaacaagcttat
ctaacttatacacaatcccgatatcgttggggaaaattaattgatgcggagcccagccga
tttatcgaagaaattaacccggaatatattgattatctgacacccgtagaagaatatcgt
tataaacctctcatggacacagatatttttggagaagttgataaaagtaaattgcgttta
aagaaaccggtttccagttcgcctcccagtagttttaaaccttctgaagagcaacttcgt
aaattacgtaaaatccgcccggaacatagttcttcgagtccaacccggggagctattacg
ctggacgaaaacttaaaagaaggagctacagtagaacatgttcgtttcggtagaggaaaa
atcataaaagttgaaggggtaggacaagacaaaaaagcagaaattaattttgatactggg
ggtattaaaaagttattgttacgattcgccaaattaaaactgatagaataa
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