Aquimarina sp. ERC-38: NBT05_14845
Help
Entry
NBT05_14845 CDS
T09583
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
aqe
Aquimarina sp. ERC-38
Pathway
aqe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aqe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NBT05_14845 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aqe03019
]
NBT05_14845 (recQ)
03400 DNA repair and recombination proteins [BR:
aqe03400
]
NBT05_14845 (recQ)
Enzymes [BR:
aqe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NBT05_14845 (recQ)
Messenger RNA biogenesis [BR:
aqe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NBT05_14845 (recQ)
DNA repair and recombination proteins [BR:
aqe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NBT05_14845 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
Helicase_C
DEAD
HTH_40
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
UZO80219
LinkDB
All DBs
Position
3549944..3552064
Genome browser
AA seq
706 aa
AA seq
DB search
MITEKEKLSTLKEYFGYDQFRPLQSEIIQGIFDKKDQMVVMPTGGGKSLCYQLPALLLPG
TTLVISPLIALMKDQVDGLKANGVEAAYLNSSQSQTEHQSIFNELLAKNTKLLYIAPESL
SVIDTVISQLEISMIAIDEAHCISAWGHDFRPAYTQLGYLKNKFPEVPIVALTATADKAT
RTDICQQLNIPHAELFLASFNRKNLFLEVRPGIKRVEQILNFINSKPEESGIIYCLSRKN
TEMLRDKLKAKGFLAEAYHAGLPHDRREKVQEDFINDRIAIVCATIAFGMGIDKSNVRWV
IHYNLPKNMEGYYQEIGRAGRDGLPSATLLFHSYADVVQLQRFADMSGNQEVQLAKLERM
KQYAESLSCRRKILLSYFGEHIEKDCGHCDVCKNPPEFIDGTIVAQKALSCIIRLGEEEP
IGTLIDVLRGAQNATVLDNNYQQLKTYGIGRDLSWQDWQQYIIQLINQGFVEIAFHLNNK
LKITPRAKKVLFEGEKVRLANLKAIEKQKETLKKAAKTIQEDTLFQRLRKLRLSIAQKND
IPAYQIFSDATLKDIEKSRPLTDDEFLQVNGVGRAKMQKYGHQFIKEILAFSSEKRTKTK
KRLASGDSYKLTLDLLNQGKTPEEISTERGLALSTIYGHLFKLSEAGHKLDLTAFIDASS
LKAIEKAREELKNPDKLKVYFDYFEETMDYNTIRMALIVLDQKETN
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atgattacagaaaaggaaaagctctccaccttaaaagaatattttggttacgaccagttc
aggccattacaaagtgaaatcatccagggtatatttgataaaaaagatcagatggtagtc
atgcctaccggaggaggtaaatctttatgttatcaactacctgcactacttttacctgga
actacccttgtgatctcgccactcattgccttgatgaaagaccaggtagacggtttaaaa
gctaacggcgtagaagcagcttatttaaatagtagtcaatcccaaacagaacatcaatca
atttttaacgagttacttgccaagaacacaaagttattatatatagctcccgaaagttta
tcggtaattgataccgttatatcacaattagaaatttcaatgattgctattgatgaggcg
cattgtatttcggcctggggacatgatttcagaccagcatatacacaactaggttactta
aagaataaatttccggaagtaccaatcgtagcgttaaccgcaactgcagataaagctacc
cgtacggatatttgccagcaactgaacattccgcatgcagaacttttccttgcttctttt
aaccgaaaaaacctttttttggaagttcgccccggtatcaagcgggttgaacaaatttta
aattttatcaattcaaaacctgaggaaagtgggatcatctattgcttaagtcggaagaat
acggagatgctacgggataagttaaaggcaaaaggatttttagctgaagcctatcacgcc
gggttaccacatgacagacgggaaaaagtacaggaagattttattaacgaccggatcgct
attgtttgtgctaccattgcctttgggatggggattgataaatctaatgtccgctgggtg
attcattataacttacctaaaaacatggaaggctattaccaggaaatcggtcgggctggt
agggatgggcttccttctgctaccttactctttcatagttatgcagatgttgtacagtta
cagaggtttgcagacatgtccggaaaccaggaggtgcaattagccaaactagaacggatg
aagcagtatgcagaatctttaagttgccgcaggaaaattttacttagctattttggggaa
catatcgagaaagattgtggacattgcgatgtttgtaaaaatccacctgaatttattgac
ggaactatagtagcacaaaaagcattatcctgtattatacgcttaggagaagaagaaccc
atcgggacgcttattgatgtattacgaggggcacagaatgctacggtactggataataac
taccagcagttaaaaacctacggaattggcagggatctttcctggcaggattggcaacaa
tacatcattcagttaattaatcagggatttgttgaaattgcttttcatctcaataataaa
cttaagattacacctagagccaaaaaagtattatttgaaggagaaaaagtacgtcttgct
aatttaaaagctattgaaaagcaaaaagaaacgctaaagaaagcagcaaaaacaattcaa
gaagataccttattccaaagactacgaaaactacgattatctattgcacaaaaaaacgac
attcctgcctatcagatctttagtgatgctactttaaaagatatagagaaatccaggccg
ttaacagacgatgaatttttacaggtaaatggtgttggtcgagctaaaatgcaaaaatac
gggcatcaatttatcaaagagattttagccttttcttcagaaaaaagaactaaaactaaa
aagaggcttgctagtggtgattcttataaactaaccctcgaccttttaaatcaaggaaaa
actccagaagaaatcagtacagaacgaggattagcgttgagtactatttacggacatctc
tttaaattatcagaagctggtcacaaacttgacttaactgcttttattgatgcttcttcc
ttaaaagctattgaaaaagccagggaagaactaaaaaatccggataaacttaaagtatat
tttgattattttgaagaaacaatggattataatactatacgtatggctctgattgtttta
gatcaaaaagaaactaattaa
DBGET
integrated database retrieval system
