Aquimarina sp. ERC-38: NBT05_17665
Help
Entry
NBT05_17665 CDS
T09583
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
aqe
Aquimarina sp. ERC-38
Pathway
aqe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aqe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NBT05_17665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aqe03019
]
NBT05_17665
03009 Ribosome biogenesis [BR:
aqe03009
]
NBT05_17665
Enzymes [BR:
aqe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NBT05_17665
Messenger RNA biogenesis [BR:
aqe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NBT05_17665
Ribosome biogenesis [BR:
aqe03009
]
Prokaryotic type
rRNA helicases
NBT05_17665
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
AAA_22
MatB
Motif
Other DBs
NCBI-ProteinID:
UZO80752
LinkDB
All DBs
Position
4281650..4283413
Genome browser
AA seq
587 aa
AA seq
DB search
MNKFEQLGLGEAVLQAVKEMGFETPSEVQEKAIPILLEQDTDMVALAQTGTGKTAAFGFP
LIEKIDASSRITQGLILSPTRELCLQITNELKNYSKFVNGLHTVAIYGGASITDQAKQIK
KGAQIIVATPGRMQDMINRKLVNITNIDYCILDEADEMLNMGFYEDIKSILSDTPDHKNT
WLFSATMPREVATIAKRFMSDPVEITVGHKNTGSKNVSHEYYVVNSRDRYAALKRLADAN
PDIFSVVFCRTKRDTQKVAENLIEDGYNAAALHGDLSQNQRDLVMKSFRNRQIQMLVATD
VAARGIDVDDITHVINYQLPDEIETYTHRSGRTGRAGKSGVSMVIVSKSEIRKIKSVERI
IKQTFEKKDIPSGEEICQIQLFHLANDIAKAEINHEIDPYLPSINEALEAFTKEELIKKL
FSVEFTRFHNYYKKSKDLNSSAESTSYSADGSVRYFINVGERDDFDWMTLKDFLKDTLDL
GQDTISRVDVKENFSFFNTPAEFQERVLAIFEDFQMDGRKVNIEISKSGGRRDGGSRRRN
RRDGSGGGGSSSRSSSRRSKNFSPRGSGTNSSDGRRRRDRRKRSDRN
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaattcgagcaattaggcttaggtgaagccgttttacaggccgtgaaagaaatg
ggatttgaaacacccagtgaagtacaggaaaaagctatccctatattgttagagcaagat
acggatatggttgctttggcacaaaccggaactggtaaaacagccgcttttgggtttcca
cttatagaaaaaattgatgcatctagtagaattacccaagggttaattctatctcctact
cgtgaattatgtttacaaattacaaatgagttaaaaaactactcgaagtttgtaaacggt
ttacataccgttgctatttacggaggtgccagcattaccgatcaggcgaagcaaattaaa
aaaggagcgcaaattattgtagcaactcccgggcgtatgcaggatatgattaatagaaag
ttggtgaatattaccaatattgattattgcatccttgacgaggctgatgaaatgttaaat
atggggttttatgaggatattaaatccattctttcagataccccggatcataaaaatacc
tggttattttcggcaacgatgcccagagaagtggctactattgcaaaacgctttatgagt
gatccggtagaaattaccgtaggtcataaaaacactggttcaaaaaatgtttctcatgaa
tattatgtagttaactcaagagatcgatatgcagccttaaaacgtcttgcagatgccaat
ccggacatattttcggtagtgttttgtcgtactaagcgagatactcaaaaagtagctgaa
aatctaattgaggatgggtacaatgccgcagcacttcatggggatttaagccagaatcag
cgtgacctggttatgaaaagttttagaaacagacagatacaaatgttagtagcgacagat
gtggcagccaggggtattgatgtagatgatattactcatgtgattaattaccagttgccc
gatgaaattgaaacgtatacacaccgtagtggccggactggtcgggcgggaaaaagcggg
gtctctatggtcattgtgtctaaaagtgagatacgcaagattaaaagtgttgaacgtatt
attaaacagacttttgagaagaaagatattccaagtggtgaagaaatctgtcaaatacaa
ttatttcacttagctaatgatattgcaaaggcagaaattaaccatgagattgacccttat
ttaccttctataaacgaagctctggaagcttttacaaaggaagagctcattaaaaaactt
ttttcagtagagtttacccgattccataactattataaaaaatccaaagatctaaatagt
agtgcagaaagtacaagttatagtgcagatggaagtgtacgatactttatcaatgtagga
gaacgggatgattttgactggatgacccttaaagatttccttaaggacactttagattta
ggacaggataccataagtcgcgtagatgtaaaagaaaatttctctttctttaacaccccg
gcagaatttcaggaaagagtgcttgctatttttgaagattttcaaatggacgggcgaaag
gtgaatatagaaatttctaagagcggtggtcgtcgcgacggaggttcgcgaaggagaaat
cgacgagatggaagcggaggcggtggatctagttccagatcttcctctcgaagaagtaaa
aacttttcaccacgcggttccggtaccaattcttctgacggaagacgaagaagagaccgg
agaaaaagaagcgatcgaaactaa
DBGET
integrated database retrieval system
