KEGG   Aquabacter sp. L1I39: J5J86_07920
Entry
J5J86_07920       CDS       T10434                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
aqi  Aquabacter sp. L1I39
Pathway
aqi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:aqi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    J5J86_07920 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:aqi03021]
    J5J86_07920 (rho)
   03019 Messenger RNA biogenesis [BR:aqi03019]
    J5J86_07920 (rho)
Transcription machinery [BR:aqi03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     J5J86_07920 (rho)
Messenger RNA biogenesis [BR:aqi03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     J5J86_07920 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA_22 NACHT AAA_25 S1CSD-TOTE-2 Fungal_virus_P2_C AAA ATPase_2
Other DBs
NCBI-ProteinID: QTL05206
LinkDB
Position
complement(1831501..1832766)
AA seq 421 aa
MREVKLQDLKSKTPVELLAFAEENQVENASTLRKQELMFAILKQLAASETEIIGEGVVEV
LQDGFGFLRSPDANYLPGPDDIYVSPSQIRRFGLRTGDTVNGQIRSPKEGERYFALLKVN
TINFEDPEKTRHKINFDNLTPLYPDERLKLEFEDSNKKDFSARIIDIVSPIGKGQRGLIV
APPRTGKTVLLQNIAKSITANHPECFLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAS
RHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP
KRFFGAARNIEEGGSLTIIATALIETGSRMDEVIFEEFKGTGNSEVILDRKVSDKRVFPA
IDITRSGTRKEELLVPADVLKKMYVLRRILNPMGTVDAIEFLLDKLRQTKTNQDFFDSMN
T
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgcgggaagtgaaactccaggatctcaagtccaaaacccctgtcgagctgctggccttc
gccgaggaaaaccaggtggagaacgccagcaccctgcgcaagcaggagctcatgttcgcc
atcctcaagcaattggccgccagcgaaaccgagatcatcggcgaaggcgtggtcgaggtg
ctccaggacggcttcggcttcctgcgctcgccggatgccaattatctccccggcccggac
gacatctatgtctccccctcgcagatccgccgcttcggcctgcgcaccggcgacacggtc
aacggacagatccggtcccccaaggaaggtgagcgctatttcgcccttctgaaggtgaac
acgatcaatttcgaggacccggaaaagacccggcacaaaatcaatttcgacaatctgacg
ccgctttatcccgatgagcgcctgaagctggaattcgaggattccaacaagaaggacttt
tcggcgcggatcatcgacatcgtctcgcccatcggcaagggtcagcgcggcctcatcgtc
gccccgccccgcaccggcaagacggtgctgctgcagaacatcgccaagtccatcaccgcc
aaccatcccgaatgcttcctcatcgtgctgctcatcgacgagcgccccgaggaagtcacc
gacatgcagcgctcggtgaagggcgaggtggtctcctccaccttcgacgagcccgcctcc
cgccacgtgcaggtggccgagatggtcatcgagaaggccaagcgcctggtggagcatggc
cgcgacgtggtcatcctcctggattccatcacccgcctggggcgcgcctacaacacggtg
gtgccctcctccggcaaggtgctgaccggcggcgtggacgccaatgccctccagcggccc
aagcgcttcttcggcgcggcccgcaatatcgaggaaggcggctcgctcaccatcatcgcc
accgcgctcatcgagaccggctcgcgcatggacgaggtgatcttcgaagagttcaagggc
accggcaattccgaggtgatcctggaccgcaaggtctccgacaagcgcgtcttcccggcc
atcgacatcacccgctccgggacccgcaaggaagagctgctggtgccggccgacgtgctc
aagaagatgtatgtgctgcggcgcatcctcaatcccatgggcaccgtggacgccatcgag
ttcctgctcgacaagctgcggcagacgaagaccaaccaggacttcttcgattccatgaac
acctga

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