Aquabacter sp. L1I39: J5J86_09620
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Entry
J5J86_09620 CDS
T10434
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
aqi Aquabacter sp. L1I39
Pathway
aqi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aqi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
J5J86_09620 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aqi03021
]
J5J86_09620 (rpoC)
03400 DNA repair and recombination proteins [BR:
aqi03400
]
J5J86_09620 (rpoC)
Enzymes [BR:
aqi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
J5J86_09620 (rpoC)
Transcription machinery [BR:
aqi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
J5J86_09620 (rpoC)
DNA repair and recombination proteins [BR:
aqi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
J5J86_09620 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
RPOC_hybrid
Apocytochr_F_C
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
QTL05512
UniProt:
A0A975DTV0
LinkDB
All DBs
Position
complement(2205681..2209865)
Genome browser
AA seq
1394 aa
AA seq
DB search
MNQEVMNLFNPATPAPTFDQIKISIASPEKIASWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIGLLLDMTLKDLERILYFEYFVVLEPGLTPLKYRQLLSEDDYLRAQDEYGEDSFTA
MIGAEAIRELLRSMDLEKIAADLRVEISEATTELKPKKLAKRLKIVEAFQLSGNKPEWMI
LTHVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVG
PELKLHQCGLPKKMALELFKPFIYARLDAKGHSATVKQAKKLVEKERPEVWDILDEVIRE
HPVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGAPIIVPSQDIVLGLYYLSIMRDNEPGEGMAFADMGEIDHALA
AKSITLATKIRGRYIGVDADGNKVSKIYETTPGRMKIGELLPKHPKVPYDVVNKLMTKKE
ISNMIDAVYRHCGQKESVIFCDRIMALGFYNAFRAGISFGKDDMVVPKKKWDLVEETRAL
TKEYEQQYNDGLITQGEKYNKVVDAWGKCTDRIADEMMKEISSVKKDPKTGRDKQINSIY
MMSHSGARGSPAQMKQLAGMRGLMAKPSGEIIESPIISNFKEGLTVMEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDSIITERDCGSTNGIHMRAIVDSGQVVASLASRVLGRT
AVEDVVEPATGAIIVPKGQMIEEPHIDRINKSGIQEIKIRSVLTCETRNGVCGTCYGRDL
ARGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLADSSFVESNFEGTIRIRNRN
VARNSDGDLIVMGRNLAVVIVDVDGTERAVNRVQYGSRLKVDEGDTVKRGQRIAEWDPYT
RPILTEVDGTVGFEDLVEGQSMNEAIDEATGIAKRVVTDTRAVRGADLRPAIIIKGGDGK
VIKLARGGDARYALPVEAIISVDPGQSIRAGDVVARVPMESAKTRDITGGLPRVAELFEA
RRPKDAAIIAEVSGTVRFGRDYKNKRRLTIEPSDGGDTVEYLIPKGKHIHLQDGDVVEKG
DFLVDGNPAPHDILAIKGVEELAAFLVNEIQEVYRLQGVNINDKHIEVIVRNMLQKVEID
DAGETDFLDGEQVDRIEFVEANEKAVEEGKKPATGHPVLLGITKASLQTRSFFSAASFQE
TTRVLTEAAVNGKVDPLEGLKENVIVGRLIPAGTGAQMNRLRAVANSRDDLIVATREQSE
GGQPMVEGPLDAAE
NT seq
4185 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaagaggtgatgaatctcttcaatccggcgaccccggctccgacctttgatcag
atcaagatctcgatcgcgagccccgagaagatcgcctcctggtcctatggcgagatcaag
aagcctgagaccatcaactaccggaccttcaagcccgagcgcgacggcctgttctgcgcg
cgcatcttcgggcccatcaaggactatgagtgcttgtgcggcaagtacaagcgcatgaag
tacaagggcatcatctgcgagaagtgcggcgtcgaggtcaccctttcgcgcgtgcgccgc
gagcgcatgggccatatcgagctggccgcgcccgtcgcccatatctggttcctgaagtcc
ctgccgagccgcattggcctgctgctcgacatgacgctcaaggacctggagcgcatcctt
tatttcgaatatttcgtggtgcttgagccgggcctgacccccctcaagtatcgccagctt
ttgtccgaggacgactatctgcgcgcccaggacgagtatggcgaggacagcttcaccgcc
atgatcggcgcggaagccatccgcgagctgctgcgctccatggacctggaaaagatcgcc
gccgacctgcgtgtggagatttccgaggccaccaccgagctgaagcccaagaagctcgcc
aagcgcctgaagatcgtcgaggccttccagctctccggcaacaagccggaatggatgatc
ctcacccatgtgccggtgatcccgccggacctgcgtccgctcgtcccgctggacggtggc
cggttcgccacgtcggacctgaacgatctttatcgccgcgtcatcaaccgcaacaaccgc
ctgaagcgcctcatcgagctgcgcgcgccggacatcatcatccgcaacgagaagcgcatg
cttcaggaagcggtggatgcgctgttcgacaacggccgccgcggccgcgtcatcacgggt
gccaacaagcgcccgctgaagtcgctcgccgacatgctcaagggcaagcaaggccggttc
cgccagaacctgctcggcaagcgcgtcgactattccggccgctccgtgatcgtggtgggt
cccgagctcaagctgcaccagtgcggcctgcctaagaagatggcgctcgagctgttcaag
cccttcatctatgcccgcctcgatgccaagggccattcggccaccgtcaagcaggccaag
aagctggtggagaaggagcgtcccgaggtttgggatatcctggacgaggtcatccgcgag
catcccgtgatgctcaaccgcgccccgacgctgcaccgcctcggcatccaggccttcgag
ccggtgctgatcgagggcaaggcgatccagcttcacccgctggtctgctcggccttcaac
gcggacttcgacggcgaccagatggccgtgcacgttcccctctcgctggaagcccagctt
gaggcgcgcgtgctcatgatgtccaccaacaacatcctgcatccggcgaacggcgcgccc
atcatcgtgccctcgcaggacatcgtgctgggtctctattatctgtccatcatgcgcgac
aacgagcccggcgagggcatggcgttcgcggacatgggcgagatcgaccacgcgctggcg
gccaagtccatcacgctggccaccaagatccgcggccgctacatcggcgtggatgcggac
ggcaacaaggtctccaagatctacgagaccacgcctggccgcatgaagatcggcgagctg
ctgcctaagcacccgaaggttccctacgacgtcgtcaacaagctgatgacgaagaaggaa
atctccaacatgatcgacgcggtgtaccgtcactgcggtcagaaggagagcgtgatcttc
tgcgaccggatcatggcgctgggcttctacaacgctttccgggccggcatttccttcggc
aaggacgacatggtcgtgccgaagaagaagtgggacctggtggaagagactcgtgccctg
acgaaggagtacgagcagcagtacaatgacggcctgatcacccagggcgagaagtacaac
aaggtcgtcgatgcgtggggcaagtgcaccgaccgcatcgccgacgagatgatgaaggaa
atctcttcggtcaagaaggacccgaagacgggccgggacaagcagatcaattcgatctac
atgatgtcccactccggagcgcgtgggtcgcccgcgcagatgaagcagcttgccggcatg
cgtggcctcatggccaagccgtcgggcgagatcatcgagagcccgatcatctcgaacttc
aaggaaggcctgaccgtgatggagtacttcaactccacccacggcgcgcgtaagggcctt
gccgacaccgctctgaagacggccaactcaggctatctcacccgtcgtctcgtcgacgtg
gcgcaggattccatcatcaccgagcgcgattgcggctcgacgaatggcatccacatgcgc
gccatcgtcgacagtggacaggtggtggcttcgctcgcctcccgtgtcctcggccgtacc
gccgtggaagacgtggtcgagccggccaccggcgccatcatcgtgcccaaggggcagatg
atcgaggagccgcacatcgatcggatcaacaagtctggcatccaggaaatcaagatccgg
tcggtgctgacctgcgagactcgcaacggcgtgtgcggcacctgctatgggcgcgatctg
gcccgtggcacgcccgtcaacatgggcgaggcggttggtgtcatcgcggcgcagtccatc
ggcgagccgggcacccagctcaccatgcgcaccttccatatcggcggcgccgcccagctg
gcggactcgtctttcgtggagagcaacttcgagggcaccatccgcatccgcaaccgcaac
gtggcgcggaactcggatggcgacctcatcgtcatgggccgcaacctcgcggtggtgatc
gtcgatgtggacggcaccgagcgcgcggtgaaccgcgtccagtacggctcgcgcctgaag
gtggacgagggcgacacggtgaagcgcggccagcgcatcgccgagtgggacccctacacc
cgtcccattctcaccgaggtggacggaaccgttggcttcgaggacctggtcgaaggccag
tccatgaacgaggccatcgacgaggccaccggcatcgccaagcgcgtggtcacggacacc
cgtgccgtgcgcggcgcggacctgcgtcccgccatcatcatcaagggtggcgacggcaag
gtcatcaagctggcccgcggcggtgacgcccgctatgccctgcccgtggaagccatcatc
tcggtggatcccggccagagcatcagggccggcgacgtggtggcccgcgtgcccatggaa
agcgccaagacccgcgacatcacgggcggtctgccgcgcgtggcggagctgttcgaggcc
cgtcgtccgaaggatgccgccattatcgcggaagtctccggcacggtccgcttcggccgc
gactacaagaacaagcgccgcctcaccatcgagccgtctgacggcggggatacggtcgag
tacctgatccccaagggcaagcacatccatctccaggacggcgacgtggtggagaagggc
gacttcctggtggacggcaacccggcgccgcacgacatcctggcgatcaagggcgtggaa
gagcttgcggccttcctcgtcaacgagatccaggaggtctaccggctccagggcgtgaac
atcaacgacaagcacatcgaagtcatcgtccgcaacatgctccagaaggtggagattgac
gacgcgggcgagaccgacttcctggatggcgagcaggtggatcgcatcgagttcgtcgag
gccaacgagaaggctgtggaagagggcaagaagcccgcgaccggccatcccgtgctcctc
ggcatcacgaaggcgagcctccagacccgctccttcttctccgcggcctccttccaggag
accacccgcgtcctcacggaagcggcggtcaacggcaaggtggacccgctggaaggcctc
aaggagaacgtcattgtcggccgcctcatcccggccggcaccggcgcccagatgaaccgt
ctgcgtgccgtggcgaactcccgcgacgacctcatcgtcgccactcgcgagcagtccgaa
ggtgggcagccgatggtggaaggcccgctcgacgcggcggagtga
DBGET
integrated database retrieval system
