KEGG   Aquabacterium sp. J223: LRS07_11145
Entry
LRS07_11145       CDS       T11732                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
aqj  Aquabacterium sp. J223
Pathway
aqj03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:aqj00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LRS07_11145 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:aqj03021]
    LRS07_11145 (rho)
   03019 Messenger RNA biogenesis [BR:aqj03019]
    LRS07_11145 (rho)
Transcription machinery [BR:aqj03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     LRS07_11145 (rho)
Messenger RNA biogenesis [BR:aqj03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     LRS07_11145 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N AAA_25 NACHT OB_RNB AAA_22 S1CSD-TOTE-2 AAA
Other DBs
NCBI-ProteinID: UUX97730
LinkDB
Position
complement(2311563..2312828)
AA seq 421 aa
MHLSELKAQHVSELIKMGEALEIDNVARLRKQELMFAIMKKRAKAGEQVFGDGVLEVLPD
GFGFLRSPDTSYMASTDDIYLSPSQIRRFNLHTGDMVEGEVRVPKDGERYFALVKVDRVN
GLTPEESKHKIMFENLTPLFPKEQFKLERELVKGDENITSRIIDLISPIGKGQRALLVAP
PKSGKTVMMQHLAHAIVANHPDIYLIVLLVDERPEEVTEMQRTVRGEVISSTFDEPAQRH
VQVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVLPSSGKVLTGGVDANALQRPKR
FFGAARNIEEGGSLTIIGTALVDTGSRMDEVIYEEFKGTGNCEIHLDRRMSEKRVYPSIL
LNKSGTRREELLLKPEILQKSWILRKLLYPMDEIEAMEFILDKMKATKTNIDFFDMMRRG
G
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgcacctgtccgaactcaaagcccagcacgtctccgaactcatcaagatgggcgaggcg
ctggagatcgacaacgtcgcccgcctgcgcaagcaggagctgatgttcgcgatcatgaag
aagcgcgccaaggccggcgagcaggtcttcggcgacggcgtgctggaagtgctgcccgac
ggcttcggcttcctgcgctcgccggacaccagctacatggcgagcaccgacgacatctac
ctgtcgccgagccagatccggcgcttcaacctgcacaccggcgacatggtcgagggcgag
gttcgggtgcccaaggacggcgagcgctacttcgcgctggtcaaggtcgatcgcgtgaac
gggctcaccccggaggagagcaagcacaagatcatgttcgagaacctgacgcccttgttc
cccaaggagcagttcaagctcgaacgcgagctcgtcaagggggacgagaacatcaccagc
cgcatcatcgacctcatctcgccgatcggcaaaggccagcgcgccctgctggtggcgccg
cccaagagcggcaagacggtgatgatgcagcacctcgcgcacgccatcgtcgccaaccac
cccgacatctacctcatcgtgctgctggtcgacgagcggccggaggaagtgacggagatg
cagcgcaccgtgcgcggcgaggtcatcagttccaccttcgacgagccggcgcagcgccac
gtgcaggtggccgagatggtgatcgaacgtgccaagcgcctggtcgagctgaagaaggac
gtggtcatcctgctcgactcgatcacccgcctggcccgcgcctacaacaacgtgctgccg
agctcgggcaaggtgctcaccggcggtgtcgacgccaacgccctgcagcggccgaagcgc
ttcttcggtgcggcgcgcaacatcgaggaaggcggctcgctgaccatcatcggcaccgcc
ctggtggacaccggctcgcgcatggacgaggtgatctacgaggagttcaagggcaccggc
aactgcgagatccacctcgaccgccgcatgtccgagaagcgcgtctacccgtcgatcctg
ctcaacaagagcggcacccggcgcgaggaactgctgctcaagccggagatcctgcagaag
agctggatcctgcgcaagctgctctacccgatggacgagatcgaggcgatggagttcatc
ctcgacaagatgaaggcgacgaagaccaacatcgacttcttcgacatgatgcgtcgaggg
ggctga

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