Aquaspirillum sp. LM1: BXU06_00970
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Entry
BXU06_00970 CDS
T04696
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
aql
Aquaspirillum sp. LM1
Pathway
aql03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aql00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BXU06_00970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aql03021
]
BXU06_00970
03400 DNA repair and recombination proteins [BR:
aql03400
]
BXU06_00970
Enzymes [BR:
aql01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BXU06_00970
Transcription machinery [BR:
aql03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BXU06_00970
DNA repair and recombination proteins [BR:
aql03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BXU06_00970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Biotin_lipoyl_2
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
AQR63795
UniProt:
A0A1U9JI61
LinkDB
All DBs
Position
224436..228632
Genome browser
AA seq
1398 aa
AA seq
DB search
MKALLDLFKQVTQEEEFDAIKIGVASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLSKVRRERMGHIELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEGYVVVDSGMTPLQYKQLLTEEDYLDKLEEYGDEFGALM
GAEAVRELLRRMDINSEIETLRHDLASTSSDTKIKKIAKRLKVLEAFQRSGIKPEWMILE
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELRAPEIIVRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVITVGPA
LRLHQCGLPKKMALELFKPFIFHKLEVLGMASTIKAAKKLVEQEVPEVWDILEEVIREHP
VLLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEA
RTLMLASNNVLSPANGEPIIVPSQDIVLGLYYLTRDKINGRGEGMAFANVSEVSRAYETR
QVELASRISVRLKEWELDDQGEFQPVIRRFETTVGRALLSDILPKGLGFEHINKALKKKE
ISKLINASFRRCGIRDTVIFADQLMYTGFAFSTRAGISICVDDMLVPTKKVELLASSQKE
VKEIEEQYRQGLVTQGERYNKVVDIWGRCGDQVAKAMMEQLGKEKTINREGKEVDQESFN
AIYMMADSGARGSVAQIRQLAGMRGLMAKPDGSIIETPITSNFREGLTVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTSHGVSMKAVLQGGDVIEPLRDRIL
GRVTAVDVVNPSTGETVYESGTLLDEAAVDNIDALGIDEVKVRTPLTCETRYGLCAKCYG
RDLGRGKVVNTGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAASQVESKSNGVARF
SSQMRYVKTDKGELVVIARSGEVVIQDDNGRERERHKVPYGATLMVQDGMALKAGQVLAT
WDPHTRPIITEYAGRVKFENVEEGSTVAKQVDDVTGLSTLVVIDPKRRAGSTSKMLRPQV
KLLDELGLEVKLTGSDASVNITFQVGAIITVKDGQEVGVGEVLARIPQESSKTRDITGGL
PRVAELFEARSPKDAGMLAEVTGTVSFGKDTKGKQRLIITDLDGSASETLIPKDKHVLVH
DGQVVNRGEVIVDGPVDPHDILRLQGIEALSRYIVQEVQEVYRLQGVKINDKHIEVIIRQ
MLRRVVISDSGDSDFIQGEQVERAEVLEANDRLNADNKIPAQYENVLLGITKASLSTDSF
ISAASFQETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGTGLAYHNNRRRQNQAGGAR
MPADLMLDDSPQIQEHNA
NT seq
4197 nt
NT seq
+upstream
nt +downstream
nt
atgaaagctctgctcgatttattcaaacaggtcacgcaggaagaagagttcgacgcgatc
aagatcggcgtcgcctcgccggagaaaatccggtcctggtcgtttggcgaagtgaaaaag
ccggagaccatcaactaccgcaccttcaagccagaacgcgacggcctgttctgcgcccgc
atctttggcccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcctgaagcat
cgcggcgtgatctgcgaaaagtgcggcgtggaagtcaccctgtccaaggtgcgccgtgag
cgcatgggccacatcgagctggccagcccggtggcgcacatctggttcctgaagagcctg
ccgtcccgtctgggcatggtgctcgacatgaccctgcgcgacatcgaacgcgtgctgtac
tttgaaggttatgtggtggtggacagcggcatgaccccgctgcaatacaagcagctgctg
accgaagaagactacctggacaagctggaagaatacggtgacgaatttggcgcgctgatg
ggcgctgaagcggtgcgcgaactgttgcgccgcatggacatcaacagcgaaatcgaaacc
ctgcgccatgacctggccagcaccagttccgacaccaagatcaagaaaatcgccaagcgc
ctgaaggtgctggaagcgttccagcgttccggcatcaagccggaatggatgattctggaa
gtgctgccggtgctgccgccggaactgcgtccgctggtgccgctggatggcggtcgcttt
gccacctccgacctgaacgacctgtatcgtcgggtgatcaaccgtaacaaccgcctgaag
cgtctgctggagctgcgcgcgccggaaatcatcgtgcgcaacgaaaagcgcatgctgcag
gaagcggtggacagcctgctggacaatggccgtcgcggcaaggccatgaccggtgccaac
aagcgcccgctgaagtccctggctgacatgatcaagggtaagggcggtcgcttccgtcag
aacttgctgggcaagcgcgtggactactcgggtcgttcggtgattaccgtgggtccggcc
ctgcgtctgcatcagtgcggtctgccgaagaaaatggcactggagctgttcaagccgttc
atcttccacaagctggaagtgctgggcatggcgtccaccatcaaggccgccaagaagctg
gtcgagcaggaagtgccggaagtctgggacatcctggaagaagtcatccgtgaacatccg
gtgctgctgaaccgtgcgccgaccctgcaccgcctgggtatccaggcgtttgaaccgacg
ctgatcgaaggcaaggccatccagctgcacccgctggtgtgcgcggcgtttaacgccgac
tttgacggtgaccagatggctgttcacgtgccgctgtcgctggaagcacagatggaagcc
cgcaccctgatgctggcctccaacaacgtgctgtcgccggccaacggcgagccgatcatc
gtgccgtcgcaggatatcgtgctgggtctgtactacctgacccgcgacaagatcaatggc
cgtggcgaaggcatggcgtttgccaatgtgtccgaagtcagccgtgcctacgaaacccgt
caggtggaactcgcctcgcgcatttcggtgcgcctgaaagagtgggaactggacgaccag
ggcgaattccagccggtgatccgtcgcttcgagaccaccgtgggccgtgcgctgctgtct
gacatcctgcccaagggcctgggtttcgagcacatcaacaaggcgctgaagaagaaagaa
atctccaagctgatcaacgcttcgttccgtcgttgcggcatccgcgatacggtgattttt
gctgaccagctgatgtacaccggttttgccttctccacccgcgccggcatttccatttgc
gtggacgacatgctggtgccgaccaagaaggtcgaactgctggccagctcgcaaaaagaa
gtgaaggaaatcgaagagcagtaccgccagggtctggtgacccagggtgagcgctacaac
aaggtggtggatatctggggccgttgcggcgaccaggtggccaaggccatgatggagcag
ctgggtaaggaaaagaccatcaaccgcgaaggcaaggaagtcgatcaggaatcgttcaac
gcgatttacatgatggccgactccggtgcccggggttcggtggcgcagatccgtcagctg
gccggtatgcggggcctgatggccaagccggatggttcgattatcgaaacgccgattacc
tcgaacttccgcgaaggtctgaccgttctgcagtactttatctccacccacggtgcacgt
aagggtctggcggatacggcgctgaagaccgccaactccggttacctgacccgtcgtctg
gttgacgtgacccaggatctggtggtgatcgaagacgattgcggcaccagccatggtgtg
tcgatgaaggcggtgctgcaaggcggtgatgtgatcgagccgttgcgcgaccgtattctg
ggccgcgtcactgcggtggatgtggtcaatccgtctacgggtgaaacggtttacgagtct
ggcaccctgcttgatgaagctgccgtcgataatatcgacgcgctgggcatcgacgaagtc
aaggtgcgcacgccgctgacctgcgaaacccgctatggcctgtgcgccaagtgctatggc
cgcgatctgggccgtggcaaggtggtgaataccggcgaagccgtgggtgtgattgccgcc
cagtcgattggcgaaccgggcacccagctgaccatgcggaccttccacatcgggggggcc
gcgtcgcgagccgctgccgccagccaggtggaatccaagtcgaacggtgtggcgcgcttc
tcctcgcagatgcgctacgtcaagaccgacaagggcgaactggtggtgattgcccgttct
ggtgaagtggtgatccaggacgacaatggccgcgagcgcgaacgtcacaaggtgccgtac
ggtgccacgctgatggtgcaggatggcatggcgctgaaggccggccaggtgctggccacc
tgggacccgcatacccgtccgatcattaccgagtacgcgggccgggtgaagttcgagaac
gtcgaagaaggctcgaccgtggccaagcaggttgacgatgtgaccggtctgtccaccctg
gtggtgatcgacccgaaacgtcgcgctggctccacctcgaagatgctgcgcccgcaggtc
aagctgctggacgagctgggcctggaggtcaagctgaccggttccgatgcttcggtaaac
atcaccttccaggttggtgccattatcacggtgaaggatggtcaggaagtgggcgtgggt
gaagtgctggcccgcatcccgcaggaatcgtccaagacccgcgatattaccggtggtctg
ccgcgtgtggccgagctgtttgaagcccgttcgccgaaggacgctggcatgctggccgaa
gtgaccggtactgtatcgttcggcaaggacaccaagggcaagcagcgcctgatcattacc
gatctggacggcagtgccagcgaaaccctgattccgaaggacaagcatgtgctggtccat
gatggtcaggtggtgaaccgtggcgaagtgatcgttgacggtccggtcgatccgcacgac
attctgcgcctgcagggcatcgaagccctgtcgcgctacatcgtgcaggaagtgcaggaa
gtgtatcgcctgcagggtgtgaagattaacgacaagcacatcgaggtgatcattcgccag
atgctgcgtcgtgtggtgatttcggattcgggtgattccgacttcatccagggtgaacag
gtggaacgcgcggaagtgctggaagccaatgatcgcctgaatgccgacaacaagattccg
gcgcagtacgaaaatgtgctgttggggattaccaaggcatcgctgtccaccgattcgttc
atctcggcggcttccttccaggaaaccacccgcgtgctgaccgaagcggccatcatgggc
aagcgcgatgacttgcgtggcctgaaggaaaacgtgattgtcggtcgtttgatcccggca
ggcaccggtttggcctatcataacaaccgtcgtcggcagaatcaggccgggggcgcacgg
atgccggctgacctgatgctggatgacagcccgcagattcaggaacacaacgcctga
DBGET
integrated database retrieval system
