Aquaspirillum sp. LM1: BXU06_10435
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Entry
BXU06_10435 CDS
T04696
Name
(GenBank) hypothetical protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
aql
Aquaspirillum sp. LM1
Pathway
aql03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aql00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BXU06_10435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aql03019
]
BXU06_10435
03009 Ribosome biogenesis [BR:
aql03009
]
BXU06_10435
Enzymes [BR:
aql01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BXU06_10435
Messenger RNA biogenesis [BR:
aql03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BXU06_10435
Ribosome biogenesis [BR:
aql03009
]
Prokaryotic type
rRNA processing factors
BXU06_10435
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AQR65424
LinkDB
All DBs
Position
complement(2414487..2418077)
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AA seq
1196 aa
AA seq
DB search
MKRMLFNATQAEELRVAIVDGQKLIDLDIETVGKEQKKGNIYKGVITRIEPSLEACFVDY
GTERHGFLPFKEVSRAYFRQFDGGRPRIQDVLREGQELIVQVEKDERGNKGAALTTYVSL
AGRYLVLMPNNPRGGGVSRRIEGEERNELRELLAQLESPAGMSLIARTAGIGRTLEELQW
DLNYLLQLWTAIESAAGAQNAPFLIFQEGSLVIRAIRDYFQPDIGEILIDTEEIHNQARQ
FMSHVMPGNVNRVKLYKDDVPLFSRFQIEHQIETAFSRAVTLPSGGAIVIDHTEALVSVD
VNSARATKGSDIETTALNTNLEAADEIARQLRLRDLGGLIVIDFIDMENPKNQREVENRL
REALKTDRARVQMGKLSRFGLLELSRQRLQPSLGESSHMPCPRCHGTGFIRGIESSALHI
LRIIQEEAMKDNTSAVHAQVPVDVATFLLNEKRADLFTVEARLKVSVVLIPNIHLETPHY
KIVRLRAEDLPEGEEPSYKMVEAPSEDSAYTSAQQEKAKPERQQAAVQGITPSQPAPVSV
RDQEASAAAAPAVAAAVAPAAPASRPAPAARQPAPVVTKPAQPGVMARLVGWVKSLFTTE
APAPVPVAEPVKPAAANPRREGNAGQGGRRDRRPNRSRNEDGQAPRRRDDASPRPERDSN
EPRAEREPRAPRAERGERPERGERPERNERPSRPERQALRHEMREREEREAREQPPREAR
EPREPRGERPSSDANRSERPERPERRRRQPEVNAPEVVDTPAVDALEPRQAEVAALEAAS
PDGVPSEAGERPEQRSRRRRGRRGGERRRDDAAAVEGQENAVVADASEHIAPLAVAAVAS
VVAASVADAVEVPAAVAADSPAVAVLPTPVMATPVLEPAPVPEELAPAAPADSLPVSVDA
APVAVEAVAPVAPIAPSMPAASVSVAVAEAMPAAPVEPVMVMVETRADDPVVIPVAPTTN
VAEILRAAPVEPAVVVQSAQDDSPVLVQVETQVDAVTTAVISQVDAAPAPAVIPEPVTAE
AEPLPATVSVALETRLTGAAMAAPVSVAEAIALVAEPAEPAADASVVVEAVAEVPVETVA
PAEAVPVTLPVAAPAPAVMESPLDLGGLILVTTQVQDAAPVATEPTLPSRRRRADLQAGA
AVHTAENVLQQVETASLIAPVEVSASLPLPEQARRANRVVHAATEEAAAMVQVETR
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttattcaacgcaacgcaggctgaagagctgcgcgttgccatcgtggat
gggcaaaagctcattgaccttgatatcgagaccgtcggcaaggagcaaaagaagggcaat
atctacaagggcgtgatcacccgcatcgagccctcgctggaagcctgctttgtcgactac
ggcaccgagcgtcatggttttttgccgttcaaggaagtctcccgcgcctatttccgtcag
tttgacggtggtcgcccgcgcattcaggatgtgctgcgagaaggccaggagctgattgtt
caggtggagaaggacgagcgcggcaacaagggtgccgccctgaccacctacgtcagcctg
gcgggccgctatctggtgctgatgcccaacaatccgcgtggcggcggcgtgtcgcgccgc
attgaaggcgaagagcgcaacgaactgcgcgaactgctggcccagctggaaagcccggcc
ggcatgagcctgattgcccgcaccgccggcattggccgcacgctggaagaactgcagtgg
gacctgaactacctgctgcaactgtggaccgccatcgaaagcgctgccggtgcgcaaaac
gcgccattcctgattttccaggaaggcagcctggtgattcgcgccatccgcgactacttc
cagccagacattggcgagatcctgattgataccgaagaaattcacaatcaggcccgccag
ttcatgagccatgtgatgccgggcaacgtcaaccgggtcaagctctacaaggacgacgtg
ccgctgttctcgcgtttccagatcgaacaccagatcgaaaccgcgttttcccgcgccgtc
accctgccgtctggcggtgccattgtcatcgaccacaccgaagcgctggtgtcggtggat
gtcaactcggcgcgcgccaccaagggcagcgacattgagaccaccgcgctgaacaccaac
ctggaagccgccgacgaaattgcccggcagctgcgcctgcgcgacctgggcgggttgatc
gtgatcgatttcatcgacatggaaaacccgaaaaaccagcgcgaagtggaaaaccgcctg
cgcgaagcgctgaaaaccgaccgcgcccgcgtgcagatgggcaagctgtcgcgctttggc
ctcttggagttgtcgcgccagcgcctgcagcccagcctgggcgaaagcagccacatgccg
tgcccgcgctgccatggtaccggctttatccgtggcatcgaatcctccgccctgcacatc
ctgcgcatcattcaggaagaggcaatgaaggacaacaccagcgccgtgcatgcccaggtg
ccggtggacgtggccaccttcctgctcaatgaaaagcgcgccgacctgtttaccgtggaa
gcgcggctgaaggtcagcgtggtgctgattccaaacatccatctggaaaccccgcactac
aagattgtgcgcctgcgcgccgaagatctgccggaaggcgaggaacccagctacaagatg
gtagaagcgcccagcgaagacagcgcctatacctcggcccagcaggaaaaagccaagcca
gagcgccagcaggcggcagtgcagggtattacgccgtcgcagcccgccccggtgtccgtg
cgtgaccaggaagccagcgcggcggctgcgcccgctgtggctgcagcagtagcaccggcg
gctccggccagtcgcccggctccggcagcccgccagcccgccccggtggtgactaagcca
gcccagccaggggtgatggcccgtctggtgggttgggtgaagtcgctgttcaccaccgaa
gcgccggctccggttccggtggcagaacccgtcaaaccggctgccgccaacccgcgccgc
gaaggcaatgccggccagggtggccgccgtgaccgccgtccgaaccgcagtcgcaacgaa
gacggtcaggcacctcgccgccgtgacgatgccagccctcgcccggaacgcgacagcaac
gagccgcgcgctgaacgtgagccgcgcgccccgcgtgctgaacgcggcgaacgcccggag
cgtggtgaacgtccggaacgcaacgaacgcccgtctcgtccggaacgccaggccctgcgc
catgaaatgcgtgagcgcgaggaacgcgaagcccgtgaacaacccccacgcgaagcccgt
gaaccacgcgaaccgcgtggcgaacgcccgagcagtgacgcaaaccgcagtgagcgcccg
gaacgtccggaacgccgccgtcgccagccagaagtcaatgcacctgaagtcgttgacacc
ccggcagtagacgcactggagccgcgccaggccgaagtggcggcgctggaagccgccagc
ccggatggcgtgccaagcgaagccggcgaacgcccggaacagcgcagccgtcgccgtcgt
ggccgtcggggtggcgaacgccgtcgtgatgacgccgctgcggtggaaggtcaggaaaac
gccgtggtcgctgacgcaagcgaacacattgcgccgctggccgttgccgccgtcgccagc
gtggttgctgccagtgtggcggatgccgtcgaagtgcccgctgccgtggcagcagacagc
ccggcggtggccgtcctgccaacccccgtgatggccacaccagtgcttgagcccgcaccg
gttccagaagagcttgcccctgctgcaccggcagacagcctcccggtcagcgtcgacgcc
gcgccggttgcggtcgaggccgttgccccggtcgcgccgattgctccgagcatgcctgct
gcttctgtgtccgttgcagttgccgaagcgatgccggcagcacccgttgaaccggtcatg
gtcatggtggaaacccgtgctgacgaccctgtcgtcatccctgtcgcgccgacgaccaac
gttgccgaaatcctgcgtgcggccccggtggaacctgctgtcgtggttcagtctgcacaa
gacgatagcccggtgctggtgcaagtggaaacccaggtcgatgccgtgacgacagcggtg
atcagccaggtagacgctgctcctgcaccggctgtcatcccggaacccgtcactgccgag
gcggaacccttgccggctaccgtgtcggttgccctggaaacccgcctgactggcgcagcc
atggctgcgccagtcagtgtggctgaagcgattgccctggtggccgaaccggctgaaccg
gcagcagacgctagcgtcgtggtggaggccgttgcagaggtgccagtggagaccgttgct
ccggcggaagccgtgccggtgacgctgcctgtggctgcgccggcccctgccgtcatggag
tcgccgctggatctgggcgggctgattctggtgaccacgcaggtgcaagatgctgcgccg
gtggcgacagaacccaccttgccgtcgcgtcgtcgccgcgccgatctgcaggctggtgcc
gcagtacacaccgccgagaatgtgctgcaacaggtggaaaccgcatcgctgattgcgccg
gtagaagtcagcgcaagcctgccgctgccagagcaggctcgtcgggcgaatcgggtggtg
cacgctgccactgaagaagcggctgcgatggtgcaggtcgaaactcgctga
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