Aquimarina sp. TRL1: HN014_01855
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Entry
HN014_01855 CDS
T10158
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
aqr Aquimarina sp. TRL1
Pathway
aqr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aqr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HN014_01855 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aqr03021
]
HN014_01855 (rho)
03019 Messenger RNA biogenesis [BR:
aqr03019
]
HN014_01855 (rho)
Transcription machinery [BR:
aqr03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
HN014_01855 (rho)
Messenger RNA biogenesis [BR:
aqr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HN014_01855 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
NACHT
AAA_25
AAA
Motif
Other DBs
NCBI-ProteinID:
QKX03710
LinkDB
All DBs
Position
489075..490775
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AA seq
566 aa
AA seq
DB search
MLEISELKAKKLPDLQEIAKNLNVPKFRTLKKLDLVYQILDHQAANPEKIKSATLPKKEE
SSSKAEAKPTEKPARPRRTRTKKTEDTAVNKTNKPVSQKNTETAPVQNKEEKAPVKKDNK
KPTSSKETKRTPTNKEEKKNTPSHNKEEKKDNNRPKNNNNNGDKQQNKNRNNNHNNKKEN
GNHDNRNRYKEPDFEFDAIITSEGVLDIMQDGYGFLRSSDYNYLSSPDDIYVSQSQIRLF
GLKTGDTVLGQVRPPKEGEKYFPLIKVNKINGLDPQVVRDRVSFEHLTPLFPQEKFNIAE
KQSTISTRIMDLFAPIGKGQRGMIVSQPKTGKTMLLKDVANAIAANHPEVYQMILLIDER
PEEVTDMQRNVKGEVIASTFDKEAIEHVKVANIVLEKAKRLVECGHDVVILLDSITRLAR
AYNTVQPPSGKILSGGVDANALHKPKRFFGAARNIEGGGSLSIIATALTETGSKMDEVIF
EEFKGTGNMELQLDRRIANRRIFPAIDLISSSTRRDDILLDDTTIQRMWIMRKYLADMNP
VEAMEFINDRFKQTRNNDEFLISMNG
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atgttagaaatttctgaattaaaagcaaaaaagcttcctgatttgcaggaaattgcaaaa
aacctcaatgtccccaaatttcgcacattgaaaaaactagacttagtttatcaaatactt
gaccatcaagcagcaaacccagaaaaaataaaatctgctacccttcctaaaaaagaagaa
tcctcttctaaagcagaagctaagcctactgaaaaacctgctagaccaagaagaacacga
acaaaaaagaccgaggacacagctgtcaataaaaccaacaaacctgtttctcaaaaaaac
acagaaacagcccctgttcaaaacaaagaagaaaaagctcctgttaaaaaggacaataaa
aaacctacttcttccaaggaaaccaaaagaactccaacaaataaagaggagaaaaaaaat
acaccctctcacaataaagaggagaaaaaagacaacaatcgcccaaaaaataataacaat
aatggcgataagcagcaaaataagaacaggaacaacaaccacaacaacaagaaagaaaac
ggaaatcacgacaacaggaacagatacaaagaacctgatttcgaatttgatgcaatcata
accagtgaaggtgttttagacatcatgcaagatggatatggttttttaagatcaagtgat
tacaattacctttcttctcctgatgacatctacgtatcacaatctcagattcgacttttc
ggtctaaaaacaggagacactgtattaggacaagtacgccctcccaaagaaggtgaaaaa
tactttcctttaattaaagtaaacaaaataaacggactagatcctcaggtagtaagagac
cgtgtttctttcgagcatctaactccactttttcctcaggaaaaatttaatattgcagaa
aaacaaagcacaatttccaccagaatcatggatctttttgcccctattggaaaaggtcaa
agaggaatgattgtatctcaaccaaaaactggtaaaacaatgcttcttaaagacgtagcc
aatgcaattgctgcaaatcacccagaagtataccaaatgattcttctgatagatgaaaga
ccagaagaagttacagatatgcagcgaaatgtaaaaggagaagtgatcgcctctacattt
gacaaagaagctattgaacacgtaaaagtagcaaacattgtattagaaaaagcaaaacga
ttagtagagtgtggtcatgatgtggttattctattagactctatcacacgattagccaga
gcatacaacaccgtacaaccaccaagtggtaaaatattaagtggtggggttgacgccaat
gctctacacaaaccaaaaaggttctttggtgccgctcgtaatatagaaggaggaggatct
ctttcgattattgccacagcactaacagaaacaggatctaaaatggacgaagttatcttt
gaagaattcaaaggtaccggtaacatggaacttcaattagatagacgcattgctaacaga
agaatattcccggctattgatcttatctctagtagcacaagaagagatgatattctactt
gacgacaccactattcaaagaatgtggatcatgagaaagtacttagcagacatgaaccct
gtagaagctatggagttcattaacgatcgtttcaaacaaaccagaaataatgacgaattc
ctcatatcaatgaatggttaa
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