Aquimarina sp. TRL1: HN014_02840
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Entry
HN014_02840 CDS
T10158
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
aqr Aquimarina sp. TRL1
Brite
KEGG Orthology (KO) [BR:
aqr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
aqr03016
]
HN014_02840
Enzymes [BR:
aqr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
HN014_02840
Transfer RNA biogenesis [BR:
aqr03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
HN014_02840
Prokaryotic type
tRNA splicing ligases
HN014_02840
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QKX03884
LinkDB
All DBs
Position
complement(745300..746691)
Genome browser
AA seq
463 aa
AA seq
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MGKKLRGKDLIKLGFPKNNSINVALGQINRYYKKKKKEQILQEAKEVLLKPELFKGDGVW
GKIAESLLTPVTVKKHALNTTRAPFMIYGEDEIDDQAKYQLYDALKLPVSVAGALMPDAH
TGYGLPIGGVLATNNAVIPYGVGVDIGCRMCLTVYPVAVSYLKGKRYRLEKILSEHTKFG
MYETHKIKHDHEIFSREEFTTIPLVKKLKDKAYKQLGTSGSGNHFVEFGIVTITDAENEW
GIKPGDYLGLLTHSGSRGLGANIAKHYTHLATKQCPLPKHVQQLAWLDLSTHDGHEYWLA
MNLAGDYAQACHDDIHKRIGKLIGAKPICKIENHHNFAWKEMVNGVECIVHRKGATPAGK
GALGIIPGSMTAPGYIVRGRGNSESLHSASHGAGRLLSRRKCKEKFTKSAINKVLKEHGV
TVLGGGVDEAPMAYKNIHNVMANQKELVEVVGTFTPKIVRMDR
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgggaaagaaattaagagggaaagaccttattaagttagggtttccgaagaataacagt
attaatgtggcattaggtcagattaatagatattataaaaagaaaaaaaaggaacagata
ttacaagaagcaaaagaagtacttcttaaaccggaattgtttaaaggagatggagtatgg
ggaaaaatagcagaaagtctgttaacacctgtaacagtaaagaagcatgcattaaatacg
acaagagctccttttatgatatatggagaagatgaaatagatgaccaggcgaaatatcaa
ttgtatgatgctctgaaattgccggtttctgtagcaggagctttaatgcctgatgcacat
acagggtacggattgccaattggaggtgttttagcaacaaacaatgctgttattccatat
ggagtgggagttgatataggttgcagaatgtgtctgacagtatatcccgttgcggtatcc
tatctaaaaggaaagcgatatcgtttagagaaaattttgtcagagcataccaagttcgga
atgtatgaaacacataaaataaaacacgatcacgaaattttttccagagaagaatttaca
acaattccattggtgaaaaaattaaaagataaagcgtacaaacaattaggaacctcagga
agtggaaatcactttgtagagtttgggatcgttacgattaccgatgctgagaatgaatgg
gggataaaacccggggattacttagggttgcttacacacagcggttccagagggttagga
gcaaatatagcaaaacactatacgcatttagccaccaaacaatgtccattacctaaacac
gtacagcaattagcctggttagatctgtcgacacatgacgggcacgagtactggctagcg
atgaacctggcaggagattatgcccaggcatgtcatgatgatatccacaagagaataggg
aagttaattggggctaaacctatttgtaaaatagagaaccatcacaattttgcctggaaa
gaaatggtgaatggagttgaatgtattgtacatagaaaaggagcaaccccagcaggaaaa
ggagccttggggattattcccgggtctatgactgcaccgggttatatcgttcgggggcga
gggaactcagaaagcttacattctgcttctcatggagctggacgattgctgtccagaaga
aaatgtaaagaaaaatttaccaaaagcgctatcaataaagtgctcaaagaacatggtgtt
acagtacttggaggaggggttgatgaagctccaatggcatataaaaatatacataatgta
atggctaaccaaaaggaattagtagaggtagtaggcacttttactcctaaaattgtcaga
atggatagataa
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