Aquimarina sp. TRL1: HN014_11560
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Entry
HN014_11560 CDS
T10158
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
KO
K03086
RNA polymerase primary sigma factor
Organism
aqr Aquimarina sp. TRL1
Pathway
aqr02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
aqr00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HN014_11560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aqr03021
]
HN014_11560
Transcription machinery [BR:
aqr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HN014_11560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r1_2
Sigma70_r4_2
PgaD
GPW_gp25
DUF6285
Motif
Other DBs
NCBI-ProteinID:
QKX05523
LinkDB
All DBs
Position
complement(2879811..2880674)
Genome browser
AA seq
287 aa
AA seq
DB search
MRQLKITKQVTNRETASLDKYLQEIGKVDLITADEEVELAQRIKAGDERALEKLTKANLR
FVVSVAKQYQNQGLTLPDLINEGNLGLIKAAKRFDETRGFKFISYAVWWIRQSILQALAE
QSRIVRLPLNKIGSINKINKTYAFLEQSHERPPSAEEIAKELDMTINDVKESMKNSGRHV
SMDAPLVEGEDSNLYDVLNSGESPNPDKQLLHESLRTEIERALETLTPREADVIRLYFGL
GDQHPMTLEEIGETFDLTRERVRQIKEKAIRRLKHTSRSKILKTYLG
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atgagacaactaaaaattacgaagcaggttaccaatcgtgaaaccgcatcgctagataag
tatttacaagaaataggaaaagtagatcttattacagcagatgaagaggtggaattagca
caacggataaaggcaggagatgaaagagcgcttgaaaaactcacgaaagctaacttgcga
tttgtggtttctgttgctaaacaataccaaaaccagggtctaacacttccggatttgatc
aatgaaggaaacttaggacttattaaagcggctaaaagatttgatgaaaccagaggtttt
aagtttatctcttatgctgtatggtggattcgtcaatctatactacaggcgcttgcagag
caatcacgtattgtacgtctgccactgaacaaaattggttctatcaacaaaataaacaaa
acatatgccttcttagagcagtctcatgaacgccctccaagtgctgaagaaattgccaaa
gaattagacatgaccattaatgacgttaaggaatcaatgaaaaattcaggacgtcacgta
agtatggacgctcctctggtagaaggagaagattctaacctatatgatgtattaaactct
ggagaatctccaaatccggataaacaattattacacgaatcccttcgtaccgaaatagag
cgtgctctggaaacattaactcctagagaagcagatgttattcgattatatttcggtctt
ggagatcaacatcctatgacattggaagaaattggagaaacctttgatctaaccagagaa
cgtgttcgccagattaaagaaaaagcaataagaagactaaaacatacgtctagaagtaaa
atattaaagacatatttaggataa
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