Aquimarina sp. TRL1: HN014_12265
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Entry
HN014_12265 CDS
T10158
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
aqr Aquimarina sp. TRL1
Pathway
aqr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aqr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HN014_12265 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aqr03021
]
HN014_12265 (rpoC)
03400 DNA repair and recombination proteins [BR:
aqr03400
]
HN014_12265 (rpoC)
Enzymes [BR:
aqr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HN014_12265 (rpoC)
Transcription machinery [BR:
aqr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HN014_12265 (rpoC)
DNA repair and recombination proteins [BR:
aqr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HN014_12265 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
QKX05653
UniProt:
A0A7H8PMK7
LinkDB
All DBs
Position
3042636..3046937
Genome browser
AA seq
1433 aa
AA seq
DB search
MARNNDKNAVKRFNKISIGLASPESILAQSNGEVLKPETINYRTHKPERDGLFCERIFGP
VKDFECACGKYKRIRYKGIVCDRCGVEVTEKKVRRDRVGHINLVVPVAHIWYFRSLPNKI
GYLLGLPSKKLDMIIYYERYVVIQPGIAKNEEGEPVQKMDFLTEEEYLNILDSLPQENLY
LDDTDPNKFIAKMGAECLIEILKRIDLDALSYELRHKANNETSKQRKTEALKRLQVVESL
REANKNRENRPEWMILKVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLM
EIKAPEVILRNEKRMLQESVDSLFDNTRKASAVKTDSNRPLKSLSDSLKGKQGRFRQNLL
GKRVDYSARSVIVVGPELKLFECGLPKNMAAELYKPFVIRKLIERGIVKTVKSAKKIIDK
KEPVVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADFDG
DQMAVHLPLGPEAILEAQLLMLASHNILNPANGSPVTVPSQDMVLGLYYMTKPRKSTDEL
EIKGEGLTFYSPEEVIIAYNEKKLNINANIKIKALDFNEEGELVPQIIETTTGRVLFNMK
VPKKAGFINEVLTKKSLRDIIGRILSLTSVPETAAFLDEIKTLGFNFAFRGGLSFSLGDI
IIPKEKHTMIADANGKVDDIVANYNMGLITNNERYNQVIDIWTSTNAQLTELSMKRIRED
QQGFNSVYMMLDSGARGSKEQIRQLTGMRGLMAKPKKSNSAGGEIIENPILSNFKEGLSI
LEYFISTHGARKGLADTALKTADAGYLTRRLVDVAQDVIINIEDCGTLRGVEVSALKKNE
EIIEPLGARIVGRTSLVDVINPLTQEVIVEGGEEIDDKIAKRIEESPVESVEVRSALTCE
AKRGICVKCYGRNLATGKTVQRGEAVGVVAAQSIGEPGTQLTLRTFHVGGIAGNISEENQ
LKSKFAGKVEIEELKLVKGEDPEGNEIDVVISRTSEIKIIDPKTKITLSTNLIPYGSQLM
IQNGDTITKDQVICQWDPYNGVVISEFAGKVRYENIEQGITYQVEIDEQTGFQEKVISES
RDKKKIPTLQILGKGDEVLRSYNLPVGAHLMVEDNEKIRVGKILVKIPRKSAKAGDITGG
LPRVTELFEARNPSNPAVVSEIDGVVSFGKIKRGNREIIVESKIGEIKKYLVKLSNQILV
QENDFVRAGMPLSDGSVTPEDILKIKGPSAVQQYLVNEVQEVYRLQGVKINDKHFEVVVR
QMMRKVRIVDPGDTIFLENQLVHKSDFIEENDQIFGMKVVEDAGDSELLKPGQIVTPREL
RDENSVLRREDKNLATARDVTPATATPILQGITRASLQTKSFISAASFQETTKVLNEAAV
SGKVDSLEGLKENVIVGHRIPAGTGMRDYESIIVGSKEEFEDRMEQKQEVNFN
NT seq
4302 nt
NT seq
+upstream
nt +downstream
nt
atggcaagaaataatgataagaatgcagtaaagagatttaataaaatctctataggatta
gcctctccagaatctatattggcacaatcaaatggagaagttttaaagcctgaaactatt
aattatcgtacacataaaccagaacgtgatggtttattttgtgagcgtatttttggtcct
gtaaaggacttcgaatgtgcttgcggtaaatataaaagaattcgttacaaagggattgtt
tgtgaccgatgtggagtagaagtaacggagaaaaaagtaagaagagatagagtaggacat
attaacttagtagtccctgtagctcatatttggtatttccgttcattaccaaacaaaatt
ggatacttgttaggacttccttctaagaaactggatatgataatctactacgaacgttat
gtagttatccagccaggaattgctaagaatgaagaaggggagcctgtacaaaagatggac
ttcttaacagaagaagaatatctaaatatattagacagcttaccgcaagaaaatttatac
ctggatgatactgatccaaataaatttattgcaaaaatgggagctgaatgtcttatagag
atattaaagcgaatcgatttggatgcgctttcgtatgagctgagacacaaagcaaataat
gaaacatcaaagcaacgtaagactgaagcactaaaaagacttcaggttgtagaatcatta
cgagaagcaaataagaatagagagaatagaccagaatggatgattctcaaagtgattcct
gtaattccgccagaattacgtccgttggtaccattggatggaggaaggttcgctacttct
gatttgaatgatttatatcgtagagtaattatacgaaacaaccgtttgaagcgattgatg
gagataaaagctccagaggttatcttgcgtaatgaaaagcgtatgttacaggaatctgta
gattcgttattcgataacacaagaaaagcttcagcagtaaaaacagattcgaacagacct
ttaaagtcactttcagattctttaaaaggaaaacaaggacgtttccgccagaacttatta
ggtaaacgtgtggattattctgctcgttctgtaattgttgtaggaccggaattaaagcta
ttcgaatgtggattgcctaaaaatatggcagcagagttatacaagccttttgttatcaga
aagctgatagaaagaggaattgtaaagactgtaaaatctgctaaaaagattattgataaa
aaagagccggtagtatgggatattctagaaaatgtactaaaaggacatccggtattacta
aaccgtgctccgacacttcaccgtttaggtattcaagcattccagccaaaactaatagaa
ggtaaagctattcagttacacccattagtatgtacggcatttaatgccgattttgatggg
gatcagatggcggttcacttaccattaggaccagaagctattctggaagcacaattgtta
atgttagcttctcataatattctgaatccggcaaatggttctccggtaacagtaccttca
caggatatggtgcttgggttgtactatatgacaaaacctcgtaagtcaaccgacgaattg
gaaataaaaggagaagggttaaccttctactctccagaagaagtgattattgcttataat
gagaaaaaattaaatattaatgccaacattaaaatcaaggctcttgattttaatgaagaa
ggagaattagttcctcagataattgaaacgactactggtagggtactgtttaatatgaaa
gtacctaagaaagcaggtttcatcaatgaggtattaactaagaagtcacttagagatatt
atcggacgtattcttagtttaactagtgttcctgaaacagcggcattcttagatgaaatt
aaaacattaggatttaatttcgcatttagaggagggttatcctttagtttgggagatatt
attatcccaaaagagaagcatacgatgattgcagatgctaatggtaaagtagatgatatc
gtagcaaactataacatgggattaataaccaataacgaacgttataatcaggttattgat
atatggacatcgacaaatgctcagttgacagagttatcgatgaagagaattcgagaagat
caacaaggattcaattctgtgtatatgatgcttgactccggagcgagggggtctaaagag
cagattcgtcagttaaccggaatgcgtggattgatggctaagcctaagaaatctaactct
gccggaggtgaaattattgaaaacccgattctttctaactttaaagaagggttatcgatc
ttagaatactttatctctactcacggagctcgtaaaggactagcggatacggcattgaaa
actgccgatgcaggataccttacaagacgtttggtagatgtagcacaagatgtaattatt
aacattgaagattgtggtacattacgaggagttgaagtatcagcattgaagaaaaatgaa
gaaataattgaaccattaggcgcacgtattgtcggacgtacttcattagtggatgtaatt
aatccgttgacacaggaagttatcgttgaaggaggagaagaaatcgatgataagatcgct
aagagaatagaagaatctcctgtagaatcagtagaagtacgatcagcattgacatgtgag
gcaaaacgcggaatatgtgtgaaatgttatgggcgtaaccttgctaccggaaaaacagtt
cagcgaggagaagcggtaggagttgttgctgcacaatccattggagaaccaggaacacag
cttacacttcgtactttccacgtaggaggtattgcaggaaacatttccgaagaaaaccaa
ttaaaatctaagttcgctggtaaggtggaaatagaagaattgaaattggtaaaaggagaa
gatccagaaggaaatgaaattgatgtagtaatttctcgtacttcagaaattaagataata
gaccctaaaactaaaattacgttaagtacgaaccttattccttacggttctcaattaatg
attcagaatggagatacaattaccaaagatcaggtgatttgccagtgggatccatataat
ggagtggttatttctgaatttgcagggaaagttcgttatgaaaatatcgagcaaggaatt
acttatcaggtagaaatagatgaacaaacaggtttccaggaaaaagtaatttcagaatca
agagataagaagaaaatcccaacgttacagattttagggaaaggagatgaagtactacga
tcgtacaacttacctgtaggtgcccaccttatggtagaagataatgagaagatcagagta
ggaaagatcctagtgaagattcctagaaagtctgctaaggcaggggatattacaggaggt
ctgccaagagtaacagaattattcgaagcacgtaatccttcaaacccagcagtagtaagt
gaaatcgatggagttgtttcttttggaaagataaaacgtggtaaccgagagattatcgta
gaatctaaaataggagaaataaagaaataccttgttaagttatcgaatcagattctggta
caagagaatgatttcgtaagagcaggaatgccgttatcagatggatcagttactccagag
gatatccttaagatcaaaggaccttctgctgtacagcagtaccttgtaaacgaagtacag
gaagtataccgattacaaggagtgaagatcaatgataaacactttgaggtagtggtacgt
cagatgatgcgtaaggttagaattgtagatccgggagatactatattcctagagaatcaa
ttagttcacaaatctgattttatagaagaaaacgatcaaatcttcggaatgaaggtggta
gaagatgcaggagatagtgagttattaaaacctggtcagatcgttactcctagagaatta
agagatgagaattctgtgttgagaagagaggataagaatttagcaactgctagagatgta
acccctgcaacagcaacacctatcttacaaggaattaccagagcgtctctacaaacaaaa
tcatttatatcagcagcctcattccaggaaactacaaaagtactgaatgaagcagccgta
agtggaaaagtagatagcttagaaggtcttaaagaaaatgtaattgttggacatagaata
ccagcaggtacaggaatgagagattatgaaagcatcatagtaggatctaaagaagagttc
gaagatagaatggaacaaaaacaagaagtaaattttaactaa
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