Aquimarina sp. TRL1: HN014_21840
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Entry
HN014_21840 CDS
T10158
Name
(GenBank) GIY-YIG nuclease family protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
aqr Aquimarina sp. TRL1
Pathway
aqr03030
DNA replication
aqr03430
Mismatch repair
aqr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
aqr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HN014_21840
03430 Mismatch repair
HN014_21840
03440 Homologous recombination
HN014_21840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aqr03032
]
HN014_21840
03400 DNA repair and recombination proteins [BR:
aqr03400
]
HN014_21840
Enzymes [BR:
aqr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HN014_21840
DNA replication proteins [BR:
aqr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HN014_21840
DNA repair and recombination proteins [BR:
aqr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HN014_21840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
GIY-YIG
RNase_H_2
GIY_YIG_2
DUF7508
DEDDh_C
DNA_pol_A_exo1
Rv2179c-like
T5orf172
Motif
Other DBs
NCBI-ProteinID:
QKX07445
LinkDB
All DBs
Position
5298081..5299454
Genome browser
AA seq
457 aa
AA seq
DB search
MYAILDIETTGGKYNEEGITEIAIYKFDGHEIVDQFISLINPERPIQPFVSNLTGINNEM
LRNAPKFYEVAKRIVEITTDAIIVAHNASFDYRILKTEFSRLGFEFERESLCTVELSRKL
IPDQPSYSLGKLVRSLGIPMTDRHRANGDALATVKLFKLLLAKDVEKKIVTNTVRFKPKR
QIDDKLLKLIDSVPSETGVYYMHDAEGKIIYIGKSRNIKKRLNQHFTSDNRKSKRIQEEV
THVTFEITGSELLALLKENEEIKLHKPKFNRALRRTRFDQALYQFTDEKGYINLKTARID
LRKKPITIFTNRQQAKSFMFKWSEEYQLCQKLMGLDTGKKNCFNYTIKQCYGACISEESP
AEYNERVMELIHHHSFKNETMVLIDRGREVDERGVVLIENGILQGFGYFTLNYQINNIEI
LRSIITPMSHNRDAQHIIQSYIRKNKKLKIIKPTSNE
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atgtatgcaattttagatatagaaacaacaggaggaaaatacaatgaagaaggtattact
gaaattgctatctataaatttgacggtcatgaaatagtggatcaatttataagtttaatt
aacccggagcgtccgatacagcctttcgtatccaacctgaccgggattaataacgaaatg
cttagaaatgcccccaaattttatgaagttgccaagcgaattgtagaaatcacaacagat
gcgattattgtggctcacaatgcgagttttgattatcgtattctgaaaacagaattctca
cgactgggatttgaattcgaaagagaatctctttgtactgtagaactctcccgaaaacta
atcccggatcaaccatcctatagcctcggaaaactagttcgaagcctgggaatccccatg
accgataggcaccgggcgaatggagatgctttagccactgtaaaacttttcaaacttctt
cttgccaaggatgtagaaaaaaagattgtcactaatacggttcgttttaaacccaaaaga
caaattgacgataagctactaaagcttattgacagtgtcccttcggagaccggagtatat
tatatgcacgatgccgaaggcaagattatctatatcggaaaaagcaggaatatcaaaaaa
aggctcaaccagcattttaccagtgataaccggaaatcgaaacggatacaggaagaagtt
acccatgtgacttttgagattacaggaagtgagttactcgccttattaaaggagaatgaa
gaaatcaaattacacaagcctaagtttaatcgggccctgagaagaacacgttttgatcag
gctctttatcaatttacagacgaaaaaggatatatcaatctcaaaacggcaagaattgac
ctcagaaaaaaacctatcactatattcactaacaggcagcaggccaaatcttttatgttt
aagtggtcagaggaatatcagctctgccaaaaattaatgggattagatactggcaaaaaa
aattgttttaactacactattaagcaatgctatggagcttgtatatcagaagaatctcct
gccgagtataacgaacgggtgatggaattaatacatcaccattctttcaaaaacgaaacc
atggttttgatcgaccggggaagagaggttgacgaacgcggagtcgtattaatagaaaat
ggaatattgcaggggttcgggtactttacccttaattatcagataaacaatatcgagatt
ttacgctctattataacacctatgagtcataacagagatgcccagcatatcattcaaagt
tacattagaaaaaacaaaaagttaaaaattattaaacctaccagtaatgagtag
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