Aquitalea sp. USM4: DKK66_02245
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Entry
DKK66_02245 CDS
T05865
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
aqs
Aquitalea sp. USM4
Pathway
aqs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aqs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DKK66_02245 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aqs03019
]
DKK66_02245 (rnr)
03016 Transfer RNA biogenesis [BR:
aqs03016
]
DKK66_02245 (rnr)
Enzymes [BR:
aqs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
DKK66_02245 (rnr)
Messenger RNA biogenesis [BR:
aqs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DKK66_02245 (rnr)
Transfer RNA biogenesis [BR:
aqs03016
]
Prokaryotic type
tRNA degradation factors
DKK66_02245 (rnr)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
OB_Dis3
T6_Ig_like
Motif
Other DBs
NCBI-ProteinID:
QBJ77057
LinkDB
All DBs
Position
complement(501961..504576)
Genome browser
AA seq
871 aa
AA seq
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MAQSAKKQKNIPLRLQDPFLEREKLKYSNPLPSREFVLQLLENNGVPMFPEELAAMLSIK
NTELGFFERRLLAMEREGQLIINRKGAICAAQKLDLIKCKVSGHRDGFGFALPDEGEGSG
VDIFLPEREMKKVMHGDRVLVRPSGVDRRGRQEGKIVEVLDHAFSKLVGRIHQERGVWIV
TPEDRRIRHEILIEPGSEKDAKHGQVVMVEILQYPDAYRQPVAKVVEVLGNYADPGMEIE
IALRKHALPHEFPAEVLAQAKSTPKKVRKKDLSKDRVDLRHLPLVTIDGETARDFDDAVY
AEKQGKGFRLIVAIADVSHYVQPGDALDQEAVNRGTSVYFPRRVIPMLPEALSNGICSLN
PDVERLCMVCDMQINGKGEVKRYQFYPAVMLSKARLTYTQVWDWIQHGTDNPLLPNIQTL
YSLFKVLLAARAKRGAIEFDSIETQMIFNEQGKIDKIVPVVRNDAHRLIEECMLAANVCA
ADFLLKSKQKCLYRVHEGPTPEKLENLRNYLQLVGLTLAGNDKPTAKDYAKLAEQIHGRP
DAPVLQTMLLRSMQQAVYTPDNNGHFGLAYDAYTHFTSPIRRYPDLLVHRSIKAVLQGSK
YKPGKWAQLGMHCSMTERRADDASRDVESWLKTYYMQDKVGEVFEGKISAVTSFGVFVLL
DDVYVEGLVHISELGKDYFHFRKDIQAIVGEKSGMSYRLGDTLTVKVVSANLENAQVDFA
LVRDTAQPVMASPGGKREKPQHASHTATSSRKQTNHGGRSRNQHGKHVASRQDSVAAVPQ
AASAASGKARNQRKPAAVPTPVDPRPPVKGEPAKSTAARRKPAGSSVAAQSAGDAVVPAP
RSRRKPAASSEAAVPSAPRGRSRNTKKPDSQ
NT seq
2616 nt
NT seq
+upstream
nt +downstream
nt
atggcccaatctgcaaaaaaacaaaaaaacattcccctgcgtttgcaggatcccttcttg
gaacgagaaaaactcaaatattccaatcccttacccagccgggagttcgttctgcaactt
ctggaaaataacggtgtgccaatgtttccggaagaactggccgccatgttgtctatcaag
aataccgaattgggcttctttgagcgccgcctgctggccatggagcgtgaaggtcagctg
atcatcaatcgtaaaggcgcgatttgtgcagctcaaaagctggatctgatcaagtgcaag
gtttccggtcaccgtgacggttttggtttcgctctgccggatgaaggtgaaggcagtggg
gtggatatcttcctgcctgagcgtgaaatgaaaaaagtcatgcatggcgaccgcgtactg
gtccgtccttccggcgttgaccgtcgtggccggcaggaaggcaaaattgtcgaggtgctg
gatcatgcattcagcaaattggtagggcgtattcatcaggaacgtggggtatggatcgtc
acgcctgaagatcgtcgtatccggcatgaaatcctcatcgagccaggcagtgagaaggat
gccaagcatggccaggtggtgatggtagaaatcctgcaatatccggatgcctatcgacag
ccggtagccaaggttgtggaagtgctgggcaattatgctgatccgggcatggaaattgaa
attgcgctgcgcaaacatgccttgccgcatgagtttccggcagaggtattagcccaagcc
aagtccacgcccaagaaagtacgcaaaaaagacttgtccaaggatcgtgtcgacttgcgt
catctgccgctggtgaccattgatggcgaaactgcacgcgacttcgatgatgctgtctat
gcggagaagcaaggcaagggtttccggctgatcgtggccattgccgatgtcagtcattat
gtccagccgggcgatgccctggatcaagaggcagtgaatcgcggaacgtccgtctacttc
ccgcgccgtgttatcccgatgctgcccgaagcactgtcaaacggcatctgttccttgaat
cccgatgtcgagcggctgtgcatggtttgtgacatgcaaatcaatggcaagggagaagtc
aaacgctatcagttctaccctgcagtcatgctttcaaaagcacggctgacctatacccag
gtatgggactggatccagcatgggacagataacccgctgttgccgaatatccagacactc
tacagcttgttcaaggtcttgctggcagcccgtgccaagcggggtgcaatcgagtttgac
tcgattgagacccagatgatcttcaacgagcagggcaagatagacaagatcgttccggtg
gtccgcaacgatgcacaccgcttgattgaagagtgcatgctggcggccaatgtctgtgcg
gcggacttcctgctcaagagcaagcaaaaatgcctgtatcgcgtacatgaaggccctacg
ccagaaaaacttgagaacctgcgcaattacttgcagttggttgggcttactcttgcgggt
aacgacaagccgacagccaaggattatgccaagctggctgagcagattcacggccgtccc
gatgcgcctgtcctgcaaaccatgttgctgcgctccatgcagcaggccgtctacacacca
gacaataatggccactttggcctggcttatgatgcctacacgcatttcacctcaccgatc
cgccgttacccggatttgctggttcaccgttcaatcaaggcagtattgcagggcagcaaa
tacaaacccggcaagtgggcccagctgggtatgcattgctccatgacagagcggcgggcg
gatgatgccagtcgtgacgtcgagtcctggctcaagacttactatatgcaggacaaggta
ggagaggtattcgaaggcaagattagtgcggttaccagctttggtgtatttgtgttgctg
gatgatgtttatgtggaaggcctggtacatatctctgaattgggcaaggactacttccac
ttccgcaaggatattcaggcaatcgttggtgaaaagagcgggatgtcttatcgcctcggc
gatacgctgacggtaaaagtggtgagcgccaatctggaaaatgcccaggttgattttgca
ctggtacgtgatacagcacagccggttatggcttcgcctggtggcaaacgcgagaaacca
cagcatgcaagccatactgctacatcctcccgcaagcagaccaatcatggtgggcgtagt
cggaatcagcatggcaaacatgttgccagccgacaagatagtgtcgctgctgttccgcaa
gcggcgtcggcagcatccggcaaggcaaggaatcagcgtaaaccggcagcggtgccaaca
ccggttgatcctcgaccgcctgtgaaaggtgagccagcgaagtcgacagccgcacgacgc
aagcctgcgggaagttccgtcgctgcgcagtctgcgggggatgccgttgtacctgctccg
cgttcgcgccgtaagccggctgcaagttctgaggcagcggtaccatctgcaccgcgcggc
cgtagccgaaataccaagaagccggacagtcagtaa
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