Aquitalea sp. USM4: DKK66_03855
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Entry
DKK66_03855 CDS
T05865
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
aqs
Aquitalea sp. USM4
Pathway
aqs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aqs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DKK66_03855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aqs03019
]
DKK66_03855
Enzymes [BR:
aqs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DKK66_03855
Messenger RNA biogenesis [BR:
aqs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DKK66_03855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QBJ77314
LinkDB
All DBs
Position
complement(826327..827745)
Genome browser
AA seq
472 aa
AA seq
DB search
MLFSELGLSPEILRAIEEQGYSEPTPIQAKAIPLVLSGRDLLAAAQTGTGKTAAFMLPIL
ERLKKFANTSVSPAMHPVRALVLSPTRELADQIGVNVKTYTKYLPLRATTVFGGMNMDPQ
TAELRRGMEVVIATPGRLLDHIQQKSIQLNKVEVLVLDEADRMLDMGFIQDIRKIMSMLP
KERQTLLFSATFAPEIKRLAADFMKDPQTVEVARQNATNEQVEQLVYSVDAGRKRYLLSH
LIKSRDMSQVIVFCKTKLSADQLARDLKRDGLVAEAIHGDKAQASRLEILSAFKEGSLRV
LVATDVAARGLDISELPFVVNYELPNSPEDYVHRIGRTGRAGASGVAISLMSPAETRQHE
AIEKLTRQTLTPQVMAGFEPGSTAPREESSHRRERDRDRDAGREQSRSGTRTPARESQRD
PMSVPASALMAGKSGEGLKTIKPAGSSRRSRKAQREVPALLLPPRYKVEVSR
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atgctgttttccgaactcgggctgtcgcccgagattcttcgtgccattgaagaacagggc
tattccgagcccacaccgatccaggccaaggccattccgctggtgctgtccggtcgtgat
ttgctggctgccgctcaaaccggtaccggcaagactgccgccttcatgctccccatcctg
gagcggctgaaaaagtttgccaataccagtgtttccccggccatgcacccggtgcgggcg
ctggtactgtcgcccacgcgcgagctggccgaccagattggcgtgaatgtaaaaacctat
accaagtatttgcctttgcgtgccaccaccgtgtttggcggcatgaacatggacccgcag
actgccgagctgcgtcgtggcatggaagtggtgattgccacgccaggccgcctgctggac
cacatccagcagaaaagcatccagctgaacaaggtggaagtactggtgctggacgaagcc
gaccgcatgctggacatgggcttcatccaggatatccgcaagatcatgagcatgctgccc
aaagagcggcaaaccctgctgttctcggccacctttgcgccggaaatcaaacggctggct
gcggacttcatgaaagacccgcaaacggtggaagtggcccgccagaatgcgaccaatgag
caagtcgagcaactggtgtattccgtcgatgccggtcgcaagcgttatctgctgagccat
ctgatcaagagccgtgacatgagccaggtcatcgtgttctgcaagaccaagctcagcgcc
gaccagctggcacgtgacctcaagcgcgacggactggtggccgaagccattcatggcgac
aaggcacaggcctcgcgcctggaaattttgtcggcattcaaggaaggcagcctgcgtgtg
ctggtggctaccgacgtggcggcacgtggcctggatatcagcgaactgccctttgtggtg
aattacgagctgcccaactcaccggaagactatgtacaccgcattggccgtaccggtcgt
gccggtgccagcggtgtggccatttcgctgatgagcccggcagaaacccgtcagcatgaa
gccattgaaaagctgacgcgccagacgctgacaccgcaagtgatggctggctttgagcct
ggttcgactgcgccgcgcgaggagtcttcccatcgtcgtgagcgcgatcgtgaccgtgat
gctggtcgtgaacagagtcgttcgggcacccgtactccggcgcgtgaaagccagcgcgat
ccgatgtcggtaccggcatcggccctgatggctggcaagtccggcgaaggcctgaaaacc
atcaagcctgccggcagcagccgccgcagccgcaaggcgcagcgcgaagtgccggccctg
ctgctgccgccgcgctacaaggtggaagtcagccgctga
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