Aquitalea sp. USM4: DKK66_05615
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Entry
DKK66_05615 CDS
T05865
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
aqs
Aquitalea sp. USM4
Pathway
aqs03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aqs00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DKK66_05615 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aqs03021
]
DKK66_05615 (rpoC)
03400 DNA repair and recombination proteins [BR:
aqs03400
]
DKK66_05615 (rpoC)
Enzymes [BR:
aqs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DKK66_05615 (rpoC)
Transcription machinery [BR:
aqs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DKK66_05615 (rpoC)
DNA repair and recombination proteins [BR:
aqs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DKK66_05615 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Biotin_lipoyl_2
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
QBJ77626
UniProt:
A0A4P6TJ79
LinkDB
All DBs
Position
complement(1174933..1179126)
Genome browser
AA seq
1397 aa
AA seq
DB search
MKALLDLFKQVTQEEEFDAIKIGIASPDKIRSWSYGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLSKVRRERMGHIELASPTAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAFVVTDPGMTPLQYRQLLTEEDFLDKEDQYGEEFVAMM
GAEAVRELLKRLNLDTEIETLRRELEATNSDTKIKKIAKRLKVLEAFQRSGMKPEWMILE
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELRAPDIIVRNEKRMLQ
ESVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFHKLEVMGLASTIKAAKKLVEQEVPEVWDILEDVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEA
RTLMLATNNVLSPANGDPIIVPSQDIVLGLYYMTRDKVNGKGEGMVFADTKEVHRAYETR
QVELATRITVRLKEWEKDEQGEFQPVIKRYETTVGRAILSDILPKGLPFEHINKALKKKE
ISKLINVSFRRCGIRDTVIFADQLMYTGFAYSTRGGISICVDDMQIPGKKVELLGEAQKE
VKEIEEQYRQGLVTQGERYNKVVDIWGRTGDKIAKAMMDELSKQKVLDREGKEVDQESFN
SIYMMADSGARGSAAQIKQLAGMRGLMAKPDGSIIETPITANFREGLTVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTSNGFTMKAVLQGGDVIEALRDRIL
GRVTAVDVVDPSTGETVLEAGTLLDEHMVDVIDSLGIDEVKVRTAITCDTRYGLCAKCYG
RDLARGKRVNAGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRNAAASQVEGKSNGTVRF
SSQMRYVANTKGELIVITRSGEVVIHDDMGRERERHKVPYGATLMVTDGLVIKAGAVLAT
WDPHTRPIITEYAGRVKFENVEEGNTVAKQTDEVTGLSTLVVIDPKRRAGSQSKMLRPLV
KLLDENGLEVKLAGSDASVSITFQVGAIITVRDGQEVGKGEVLARIPQESSKTRDITGGL
PRVAELFEARSPKDAGMLAEVTGTVSFGKDTKGKQRLIITDLEGNGYENLIPKDKHVLVH
DGQVVNRGELIVDGPVDPHDILRLQGIEALARYIVQEVQEVYRLQGVKINDKHIEVIIRQ
MLRRVIISDSGDTEFIQGEQVERADVLEMNDQMLAEGKEPAQYENILLGITKASLSTDSF
ISAASFQETTRVLTEAAIMGKKDDLRGLKENVIVGRLIPAGTGLAYHRTRRRQGQGLDIS
QSQLLDEQQVDEVENNS
NT seq
4194 nt
NT seq
+upstream
nt +downstream
nt
atgaaagctctgctcgacctctttaagcaagtaacgcaagaagaagagtttgatgcgatt
aaaatcggcatcgcttcgcccgacaagatccgttcctggtcttatggtgaagtcaaaaag
ccggaaaccatcaactatcgtaccttcaagccggaacgtgacggcctgttctgcgcccgt
atcttcgggccggtaaaagactacgaatgcctgtgcggcaaatacaagcgcctgaagcac
cgtggcgtcatctgcgaaaagtgtggcgttgaagtcaccctgtccaaggtgcgtcgcgaa
cgcatgggccacatcgaactggccagcccgactgcgcacatctggttcctgaagagcctg
ccgtcccgtctgggcatggtgctcgacatgaccctgcgcgacatcgaacgcgtactgtac
ttcgaagcattcgtcgtgaccgatccgggcatgaccccgctgcaataccgtcagctgctg
accgaagaagacttcctggacaaggaagaccagtacggcgaagaattcgtcgccatgatg
ggtgccgaagccgtacgcgaactcttgaagcgtctgaatctggataccgagatcgagacc
ctgcgtcgcgaactggaagccaccaattccgacaccaagatcaagaagatcgccaagcgt
ctgaaagtactggaagcattccagcgctccggcatgaagccggaatggatgattctggaa
gtcctgccggtactgccgccggaactgcgtccgctggtaccgctggatggtggccgtttc
gccacttccgacctgaacgatctgtatcgccgcgtcatcaaccgtaacaaccgtctgaag
cgcctgctggaactgcgcgcaccggacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaatcggttgactcgctgctggacaacggtcgtcgcggcaaggccatgactggcgccaac
aagcgtccgctgaagtccctggccgacatgatcaagggtaagggcggtcgcttccgtcag
aacttgctgggtaagcgtgtcgactactccggccgttccgtgattaccgtaggcccgacc
ctgcgtctgcatcagtgcggtctgccgaagaaaatggcgctggaactgttcaagcccttc
atcttccacaagctggaagtcatgggcctggcctccaccatcaaggcagccaagaagctg
gtagagcaggaagtgccggaagtatgggacatcctggaagacgtgatccgcgaacatccg
gtcctcttgaaccgtgcgccgaccctgcaccgtctgggtatccaggcgttcgagccggtg
ctgatcgaaggcaaggccatccagctgcatccgctggtctgcgcggcattcaacgccgac
tttgacggtgaccagatggccgttcacgtgccgctgtcgctggaagcacagatggaagcc
cgcaccctgatgctggccaccaacaacgtgctgtccccggccaacggcgacccgatcatc
gtaccgtcccaggatatcgtgctgggtctgtactacatgacccgcgacaaggtaaacggc
aagggtgaaggcatggtatttgccgacaccaaggaagtgcatcgcgcttacgaaacccgt
caggttgaactggctacccgtattaccgttcgtctgaaagaatgggaaaaggacgagcag
ggcgaattccagccggtgatcaagcgttacgagaccaccgttggtcgtgccatcctgtcc
gatatcctgccgaagggcctgccgttcgagcacatcaacaaggcgctgaagaagaaggaa
atctccaagctgatcaacgtatcgttccgccgttgcggcatccgcgataccgtgatcttc
gccgaccagttgatgtacaccggttttgcctactccacccgtggcggtatctccatttgc
gtggacgacatgcaaatcccgggcaagaaggtcgagctgctgggcgaagcccagaaggaa
gtcaaggaaatcgaagaacagtaccgtcaaggtctggtcacccagggcgaacgctacaac
aaggtagtggacatctggggccgtaccggcgacaagatcgccaaggccatgatggacgag
ctgtccaagcagaaggtgctggaccgcgaaggcaaggaagtcgatcaggaatccttcaac
tccatttacatgatggccgactctggtgcgcggggttccgcagcacagatcaagcagctg
gccggtatgcggggtctgatggccaagccggacggctcgattatcgaaacgccgattact
gccaacttccgtgaaggtctgacggttctgcagtacttcatctccacccacggtgcccgt
aagggtctggcggatacggccttgaagactgccaactccggttacctgacccgtcgtctg
gtagacgtgacgcaggatctggtggtgatcgaagatgattgcggcaccagcaatggcttc
accatgaaggctgtcctgcagggcggtgacgtgatcgaagcgctgcgtgaccgtattctg
ggtcgtgttaccgctgttgacgtggttgatccgtcgactggcgaaaccgttctggaagcc
ggcaccctgctggacgaacacatggttgacgtcatcgacagcctgggtatcgacgaagtc
aaggtccgcactgccatcacttgcgacacccgttatggtctgtgcgccaagtgctacggt
cgtgacctggcacgcggcaagcgcgtgaacgccggtgaagcagtcggtgtgattgccgcc
cagtcgattggtgagccgggtacccagctgaccatgcgtaccttccacattggtggtgcc
gcgtcccgaaatgccgcagccagccaggttgaaggtaagtcgaatggtaccgtacgcttc
tccagccagatgcgttatgttgccaacaccaagggcgagctgattgtcatcacccgttcc
ggtgaagtggtgatccatgacgatatgggccgtgagcgcgaacgccacaaagtaccgtat
ggcgccaccctgatggtgaccgacggtctggtgatcaaggctggtgcagtcctggcgacc
tgggacccgcacacccgtccgatcatcaccgagtacgctggccgcgtgaagttcgaaaac
gtggaagagggcaacaccgttgccaagcagaccgacgaagtgaccggtctgtccacactg
gtggttatcgatccgaagcgtcgtgccggttcgcagtccaagatgctgcgtccgctggtg
aagctgctggacgaaaatggtctggaagtgaagctggcaggttcggatgcttcggtatcc
atcaccttccaggtaggcgccatcattaccgtgcgtgacggtcaggaagtgggcaagggt
gaagtgctggcccgtatcccgcaggaatcctccaagacccgtgacattaccggtggtctg
ccgcgtgtggctgagctgttcgaggcccgttcgccgaaggatgccggtatgctggccgag
gtgaccggtactgtttccttcggtaaggacaccaagggcaagcagcgtctgatcatcact
gatctggaaggtaacggttacgaaaacctgatcccgaaagacaagcacgtactggtgcac
gatggtcaggtcgtcaaccgtggtgaactgatcgtcgacggtccggttgacccgcacgac
atcctgcgtctgcaaggtatcgaagcgctggcgcgttacatcgtccaggaagttcaggaa
gtgtaccgtctgcagggcgtgaagattaacgacaagcacatcgaagtgatcattcgccag
atgctgcgtcgtgtcatcatctccgacagcggtgataccgagttcatccagggtgaacag
gttgaacgtgcggacgttctggaaatgaacgaccagatgctggccgaaggcaaggaacct
gcccagtacgaaaacatcctgctgggtattaccaaggcttccctgtccaccgactccttc
atctcggcggcttccttccaggaaaccacccgcgtgctgaccgaagcggccatcatgggc
aagaaggacgatctgcgcggtctgaaggaaaacgtgatcgtgggtcgcctgattccggcc
ggtaccggtctggcctaccatcgtacccgtcgccgccagggacaaggtctggatatctcc
cagtcccagttgctggatgagcaacaggtcgatgaagtggaaaacaacagctaa
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