Aquitalea sp. USM4: DKK66_08195
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Entry
DKK66_08195 CDS
T05865
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
aqs
Aquitalea sp. USM4
Pathway
aqs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aqs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DKK66_08195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aqs03019
]
DKK66_08195
Enzymes [BR:
aqs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DKK66_08195
Messenger RNA biogenesis [BR:
aqs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DKK66_08195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
AAA_22
HI1480
Shikimate_DH
Cas3-like_C_2
GRP
Motif
Other DBs
NCBI-ProteinID:
QBJ78079
UniProt:
A0A4P6TJG1
LinkDB
All DBs
Position
1723025..1724482
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AA seq
485 aa
AA seq
DB search
MSDLSFADLGLAQDLLRAVADTGYTVPTPIQAQAIPQVLKGGDLLAAAQTGTGKTAGFTL
PLLQLLMGKPSRQAGKPRALVLTPTRELAAQVEESVREYGKYLPLKSMVMFGGVGINPQI
AALRKPVDILVATPGRLLDHVSQRTLDLSAVEILVLDEADRMLDMGFIHDIRKVLALLPA
KRQNLLFSATFSDEIKALADKLLDQPKLVEVARRNTTNELVDQRVHLVDRDKKTDLLIKL
IRDHNWYQVLVFTRTKHGANRLAEKLDKIGIPAAAIHGNKSQNARTRALADFKNSTLQVL
VATDIAARGLDIDQLPHVVNFELPNVPEDYVHRIGRTGRAGSPGEAVSLVCVDEFNFLRD
IEKLTKQSIARFTVPGFEADLNVKPEPIPMGGNSGRGRGQGGGGRQGQGARQGQGGGKPR
HEQQAKPTGHGHRSPTGNTPRNKPAAAQPQGSRQTQAAKPAGGQTQQRRSQPARQVSALL
SPGKR
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatttaagctttgctgaccttggcctggcccaggatttgttgcgtgccgtggcc
gataccggttacaccgtgcccacccccatccaggcgcaagccattccgcaggtactcaag
ggtggcgatttgctggccgccgcgcaaaccggtaccggcaagaccgccggtttcaccctg
cctttgctgcaattgctgatgggcaaaccgtcgcgccaggcgggcaaaccgcgcgcgctg
gtgctgacccccacgcgtgaactggccgcccaggtggaagagtcggtccgcgaatacggc
aaatacctgccgctcaaatccatggtgatgtttggtggtgtcggcatcaacccgcagatt
gccgccttgcgcaagccggtggacattctggtggccacgccgggccgcctgctcgaccat
gtcagccagcgcacgctggatctgtcggccgtggaaatcctggtgctggacgaggccgac
cgcatgctggacatgggcttcatccacgacatccgcaaggtgctggccctgctgccggcc
aagcggcagaacctgctgttttcggccaccttctccgacgagatcaaggcactggccgac
aagctgctggatcaacccaagctggtggaagtggcgcgccgcaacaccaccaacgagctg
gtggaccagcgcgtgcatctggtggaccgcgacaagaagaccgatctgctgatcaagctg
atccgcgatcacaactggtatcaggtgctggtgttcacccgcaccaagcacggtgccaac
cgtctggcggaaaagctggacaagatcggcattccggccgcagccattcacggcaacaag
agccagaatgcccgtacccgcgccttggccgacttcaagaactccaccctgcaagtgctg
gtggccactgatatcgccgcccgcggcctggatatcgatcagctgccgcacgtggtcaac
ttcgaactgcccaatgtgccggaagactatgtacaccgtatcggccgtaccggccgagcc
ggcagtccgggcgaagcggtatcgctggtgtgcgtcgatgaattcaatttcctgcgtgac
atcgaaaagctgaccaagcaatccatcgcccgctttactgtacccggctttgaagccgac
ctgaacgtgaagccggaacccatccccatgggtggcaatagcggtcgtggccgcggccag
ggtggcggtggccgtcagggtcagggcgcacgtcagggccagggtggcggcaagccgcgc
catgagcagcaagccaagcctaccggccatggccatcgcagcccgacgggcaacacaccg
cgcaacaagccggcagcggctcagccgcaaggctcgcgtcagacacaagccgccaagcct
gccggtggccagacgcagcaacgtcgcagccagcctgcacgccaggtttcggccttgctc
tcgccgggcaagcgctaa
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