Aquitalea sp. USM4: DKK66_09905
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Entry
DKK66_09905 CDS
T05865
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
aqs
Aquitalea sp. USM4
Pathway
aqs03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
aqs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
DKK66_09905 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aqs03400
]
DKK66_09905 (recB)
Enzymes [BR:
aqs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
DKK66_09905 (recB)
DNA repair and recombination proteins [BR:
aqs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
DKK66_09905 (recB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
Biotin_carb_C
AAA_11
DUF3054
ResIII
Motif
Other DBs
NCBI-ProteinID:
QBJ78369
UniProt:
A0A4P6TK55
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All DBs
Position
2116869..2120435
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AA seq
1188 aa
AA seq
DB search
MSLQVLDALNCPLAGVNLIEASAGTGKTWTIAALYLRLLLEDVDGEAPPGIDSLLVVTYT
KAATAELRERLRQQLSDFLEVLQDKPTGNPFLQALAARFAPGSVRELAMQRLQAAISGFD
AAAIYTIHGFCQRVLTDAAFESGQTFAAELVSDDDRLLVEVVDDFWRQRVVTSPLLSQVL
AEAGETPDGWLAEIRPWLAKPYLQLVQPAAHDLQQALQQVEQHWHALAADPATIQAGFDL
LLATAGFKATSHSPAQLERSMDELQQWLAEPDSLPIIGKDALKQLTRLTPAALAKGMKKG
FVAPEHALFQRIGDWLEAWDGYLAQLQLSLAGLKLELIDWVNQELARRRSQERVRSFDDL
LTELGDALADPVGGAQLAAAVARSFRVALIDEFQDTDPIQYSIFQQCFAVQQRPLFLVGD
PKQAIYSFRGADIFAYLDARSDAPSAQHYSLDTNRRSDVPLVHTVNQLFSRTRPFLLDEI
AYQPVHAAPSSGAVLEVDDDDAAFTVLWQEPETDKPLNKDSAARASAQGCAHEIARLLTL
AGQDRAAIIKNAQRRPLRGGDIAVLVSTHRQGDQMRQALAERGVPSVALTQESVFASREA
GEMLALLRAWAEPASESRLRAALVTELYGLDATSLLADVEDEARWEARLLANAADHQRWL
EHGFMRAWRQFMAREQLAVRLLPLPDGERRLTNLSHLAELLQSETDRRHGMAPLLAWLEG
RVANPPGGEEAMLRLESDAALVKIVTIHTSKGLQYPVVFCPYLWDGALERRNTSFWRYRA
AERAMLAPDVLADAAVRQQAASEMLAEKLRLLYVALTRAQHRQYLAWGWVKDMHTAALSW
LLHAQDCPDLAALRELELTAAQLASQLVTWQQALPQAMTLRALEQGLNPLPLAQDSRQDY
SARLFERTVYSPWRVASFTSLAHGQSGKSSERPDHDSTPQQVVPAQQEDALPPDSPFAFP
RGARAGTCLHAMFENIDFGMADEELQAPVAEQLRRHGFAEEWQPAAMQLLRQTLDAELDP
GVRLSAVPAGQKLVEMEFTLPVRQLDVAALRAVLADPAHGLAEPLRQAAAELDFHTVRGY
LKGFIDLVFAVDGRFYLVDYKSNHLGNQPDDYAPAQLVQSVAREHYYLQYLIYCVALRRY
FSARQQDFASRFAGVRYLYLRGMGQPGMGVWCDQPSASLLAALDDLLR
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
atgagtctgcaagtactggacgccctcaactgcccgctggcaggcgtcaatctgatcgaa
gcctcggcgggtacgggcaagacctggaccatcgccgcgctttacctgcgtttgctgctg
gaagatgtggacggcgaagcgccgccgggcatcgacagcctgctggtggtgacctacacc
aaggccgccactgccgagctgcgtgaacgcctgcgccagcaactgagtgattttctcgag
gtattacaggacaagcccaccggcaaccccttcttgcaggcgctggcggcccgttttgcg
ccgggcagcgtgcgggaactggccatgcagcgcttgcaagcggccatcagcggttttgat
gccgccgccatctacaccattcacggcttctgccagcgcgtgctgaccgacgccgccttt
gaaagcgggcaaacctttgctgccgaactggtcagcgatgacgaccgcctgctggtggaa
gtggtggacgacttctggcgtcagcgcgtggtaaccagccccttgctgtcgcaggtgctg
gccgaggccggggaaacgcccgatggctggctggcagaaatccgcccctggctggccaaa
ccctatttgcagctggtgcagcctgccgcgcatgatttgcagcaggccttgcagcaggtg
gaacagcactggcacgcgctggccgccgacccggctactatccaggccgggtttgatctc
ttgctggcaacggcaggtttcaaggccaccagtcacagcccggcccagctggagcgcagc
atggacgagctgcaacagtggctggccgaaccggacagcctgcccattatcggcaaggat
gcgctcaaacagctcacccggctgactccggccgcgctggccaagggcatgaagaaaggc
tttgtcgcgcctgagcatgcattgttccagcgcattggcgactggctggaggcctgggac
ggctatctcgcccagctgcaactgtcgctggcgggcctcaagctggaactgattgactgg
gtcaaccaggagctggcgcgccgtcgcagtcaggagcgggtgcgcagctttgacgacctg
ctcaccgaactgggcgacgcgctggccgacccggttggcggtgcacagctggctgcggcg
gtggcgcgcagcttccgcgtggcgctgattgatgaattccaggataccgaccccatccag
tacagcattttccagcagtgttttgccgtgcagcagcggccgctgtttctggtgggcgac
cccaagcaggccatttacagcttccgcggggcggatatctttgcctatctggacgcccgc
agcgacgcccccagcgcccagcactactcgctggataccaaccgccgttccgacgtgccg
ctggtacacaccgtcaaccagctgttcagccgcacgcgtccgttcctgctggatgaaatt
gcctaccagccagtgcatgctgcgcccagctccggtgcggtactggaggtggacgacgat
gatgccgcatttaccgtgctgtggcaggagccagaaaccgacaagccgctgaacaaggac
agtgccgcccgagccagtgcgcagggctgcgcccatgaaattgcccgcctgttgacgctg
gccgggcaagaccgggccgccatcatcaagaatgcccagcgtcgtccgctgcgtggcggt
gatattgccgtgctggtgtccacccaccgccagggcgaccagatgcgccaggcgctggct
gaacgcggcgtgcccagcgtggcgcttacccaggaaagtgtgtttgccagccgggaggcc
ggtgagatgctggccctgctgcgcgcctgggccgagccggccagtgaaagccgcctgcgt
gcggcactggtgaccgaactgtacgggctggatgccacctcattgctggccgacgtggaa
gacgaagcgcgctgggaggcccgtttgctggccaatgcggccgatcatcagcgctggctg
gaacatggcttcatgcgcgcctggcggcagttcatggcgcgcgagcaactggccgtgcgc
ctgctgcccttgcccgatggcgagcggcggctgaccaatctgtcccatctggccgagctg
ctgcaaagcgaaaccgaccgccgccatggcatggcacccttgctggcctggctggagggc
agggtggccaacccgccaggcggtgaagaagccatgctgcggctggaaagtgatgccgcg
ctggtgaaaatcgtcaccatccacacctccaaaggcctgcaatatccggtggtgttctgc
ccttatctgtgggatggcgcgctggaacgacgcaataccagtttctggcgctaccgtgcc
gctgaacgcgccatgctggcaccggacgtgctggccgacgccgccgtgcgtcagcaagcc
gccagtgaaatgctggcggaaaaactgcgcctgctctacgtggcgctgacccgtgcccag
caccggcaatacctggcctggggctgggtgaaggacatgcacaccgccgcgctgtcctgg
ttgctgcatgcgcaggattgccccgatctggctgcgctgcgcgagctggagctcaccgcc
gcccagctagccagccagctggtgacgtggcagcaagccctgccacaggccatgacattg
cgcgcgctggagcaggggctcaaccccttgcctctggcgcaagacagccggcaggactat
agtgcgcgcctgttcgagcggacggtttacagcccttggcgagtggccagcttcacctcg
cttgcccacgggcagagcggcaagtccagcgagcgacccgaccacgacagcacgccgcag
caagttgtgccagcgcagcaggaagatgcgttgccgccggatagcccgtttgcctttccg
cgtggcgcgcgcgctggtacttgcctgcacgccatgttcgaaaacatcgacttcggcatg
gctgatgaagaactgcaggccccggtggccgagcaattgcgacgccatggttttgccgag
gaatggcagccagccgccatgcagttgctgcgccagacgctggatgccgaactcgacccc
ggtgtgcgcttgtcggcggtgcctgccggacaaaagctggtggaaatggaattcaccctg
ccggtacggcaactggacgttgccgccctgcgtgcggtgctggccgaccctgcccatggc
ctggccgagccgctgcgccaggccgcagcggagctggatttccacaccgtgcgcggctat
ctcaagggcttcatcgacctggtgtttgccgtggacggccgcttttatctggtggattac
aagtccaaccacctgggcaatcagccggacgactatgccccggcgcaactggtgcagtcg
gtggcgcgtgaacattattatttgcagtacctgatttactgcgtggcgctgcgtcgctat
ttcagcgcccgccagcaggattttgccagccgctttgccggggtgcgttatctctatctg
cgcggcatggggcagcccggtatgggggtgtggtgcgaccagccttccgccagcctgttg
gctgcgctggatgatttgctgcgttga
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