Aquitalea sp. USM4: DKK66_17160
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Entry
DKK66_17160 CDS
T05865
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
aqs
Aquitalea sp. USM4
Pathway
aqs03410
Base excision repair
aqs03430
Mismatch repair
aqs03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
aqs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
DKK66_17160 (recJ)
03430 Mismatch repair
DKK66_17160 (recJ)
03440 Homologous recombination
DKK66_17160 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aqs03400
]
DKK66_17160 (recJ)
DNA repair and recombination proteins [BR:
aqs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
DKK66_17160 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
DKK66_17160 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DKK66_17160 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Glyco_transf_4
Peripla_BP_6
Motif
Other DBs
NCBI-ProteinID:
QBJ79644
LinkDB
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Position
complement(3728618..3730309)
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AA seq
563 aa
AA seq
DB search
MSRIVTRNIPDQHHATLVAQGLSPLMARLYAARGIAGSDELDYSLKALLPYHSMKNITAM
ASRLADAIASGQRMLVVADYDADGATACSVAVKGLSMLGGKVDFIVPNRFEYGYGLTPEI
VDLAAQSKPDIIVTVDNGIASVAGVERARALGIEVLITDHHLPGDTLPQALIVNPNQPGC
EFPSKHLAGVGVMFYVLLALRAEQRQRGIYAGRTEPNLGELLDYVALGTVADVVRLDQNN
RILVENGLRRMRSGRMVPGIAALFRIAGRAHYKANTFDLGFTLGPRLNAAGRLDDMSLGI
ACLLSGTESQAMTLAQELDRLNRERRVIEHGMQDEALAVLSSIDPSDRYTLTLYRDDWHQ
GVVGIVASRLKERFHRPAIVFAPGDEGEIKGSGRSIPGFHLRDALDLVFKRHPGLILKFG
GHAMAAGMTLAEARFAEFQQAFEQVARELLDENQLTRTIETDGSLDARELHLPFAEELAA
EVWGQGFPVPYFHDRFAVMSQRVVGDKHLKLRIAKQGQEFDAMLFNQVDWLPDNINAVYQ
LVANEWQGRKELQIYLQHWTAVE
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgtcacgcatcgtcacccgcaatattccagatcaacatcatgccaccctggttgcccag
ggcctgagtcccttgatggccaggctgtatgccgcccgcggcattgccgggtcggatgag
ctggactacagcctcaaggccctgctgccttatcacagcatgaagaacatcaccgccatg
gccagccgtctggccgacgccattgcctccgggcagcgcatgctggtggtggcggactat
gacgctgatggcgcaacagcttgctcggtggcggtgaaaggcctgtccatgctgggcggc
aaggtggatttcatcgtacccaaccgctttgaatacggttacggcctgacgccggaaatt
gtcgacctggccgcgcaaagcaagcccgacatcatcgtcaccgtcgataacggtattgcc
agcgtggcaggggtggagcgagcacgtgcattgggcatcgaagtgctgattaccgaccat
catctgcctggcgacaccctgccgcaggccttgatcgtcaaccccaaccagccgggctgc
gaattcccctccaagcacctggccggggtaggagtgatgttttatgtgttgctggcattg
cgcgccgagcaacgccagcgcggcatctacgccgggcggacagaacccaatctgggcgaa
ttgctggactacgtggcactgggaacggtggctgacgtggtacggctggatcagaacaac
cgtatcctggtggaaaacggcctgcgccgcatgcgtagcggccgcatggtgcctggcatt
gccgcactgttccgcattgccggacgtgcacattacaaagccaacacctttgatttggga
tttactcttggtccccggctaaatgcggccgggcggctggatgacatgagcctgggcatc
gcctgcctgctatccggcacggaaagccaggccatgacactggcgcaagagctggaccgg
ctgaaccgcgagcgccgggtcatcgagcatggcatgcaggacgaagcgctggcggtactg
tccagcatcgacccgtcagaccgctacacccttaccctgtaccgggatgactggcaccag
ggtgttgtcggcattgttgcctcgcgcctgaaagaacgtttccatcgtccggccatcgtg
tttgcgccgggcgatgaaggcgagatcaagggctctggccgttcgattcccggtttccac
ctgcgcgatgcgctggatctggtgttcaagcgccacccgggcttgatcctcaagtttggc
ggccatgccatggcagccggcatgacgctggcagaagcacgatttgccgaattccagcag
gcattcgagcaggtggcacgcgagttgctggacgaaaaccagctcacccgcaccatcgaa
accgacggcagcctggatgcgcgtgagctgcatctgccgtttgccgaagaactggccgca
gaagtgtgggggcagggctttccggtgccgtatttccacgaccgctttgccgtgatgagc
cagcgcgtggtgggagacaaacatcttaaattacggattgccaagcaagggcaggagttc
gacgccatgctgttcaatcaggtggactggctgcctgacaatatcaatgcggtgtatcag
ctggtggccaatgaatggcaagggcgcaaggaattgcagatctatctgcaacactggacg
gcagtggagtga
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