Radiobacillus deserti: FN924_00725
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Entry
FN924_00725 CDS
T06091
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
aqt
Radiobacillus deserti
Pathway
aqt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aqt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FN924_00725 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aqt03021
]
FN924_00725 (rpoC)
03400 DNA repair and recombination proteins [BR:
aqt03400
]
FN924_00725 (rpoC)
Enzymes [BR:
aqt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FN924_00725 (rpoC)
Transcription machinery [BR:
aqt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FN924_00725 (rpoC)
DNA repair and recombination proteins [BR:
aqt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FN924_00725 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QDP38879
UniProt:
A0A516KBV8
LinkDB
All DBs
Position
141684..145298
Genome browser
AA seq
1204 aa
AA seq
DB search
MLDVNNFEFMKIGLASPDKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPQKDWEC
HCGKYKRVRYKGVVCDRCGVEVTKAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRALEEVIYFAAYIVTDSGDTALEKKQLLSEKEYRAYRDKYGQSFQAQMGAEAIRKLLQ
DIDLDKEVGLLKEELKTAQGQRRTRAIKRLEVLEAFRNSGNEPSWMILDVLPIIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPSIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPHLKMYQCGLPKE
MAVELFKPFIMKELVAKGLAHNIKSAKRKIERLHPEVWDVLEEVIKEHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARILMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYVTLERKDAVGEGMVFKDLNEALIAYQNGYVHLHTRIAVY
AGSLGNQTFTEEQNTKLLLTTVGKLIFNETLPSSFPYMNEPTQTNLEVKTPEHYFVEKGT
NIKEEIAKRDIIPPFKKGILGNIIAEVFKRFKISETSKMLDRMKDLGFSYSTKAGITVGV
SDIVVLGDKQEILDEAQTKVDKVLKQFRRGLITEEERYDRVIAIWSKAKDDIQERLMKSL
DPRNPIFMMSDSGARGNASNFTQLAGMRGLMANPAGRIIELPIKSSFREGLTVLEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDVIVREEDCGTDRGLTVQSIKEGTEMIEPLI
DRLIGRTSFQTIYHPETKELLAERNEVITEDKAKQIVDAGIEQLMIRSVFTCNTKHGVCK
KCYGRNLATGDEVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQELF
EARNPKGQAVISEIHGTVQDINEVKDKQEIVIQGAVETKSYTAPYGARVKVSIGDEVIAG
QELTEGSVDPKELLKIQGIDGVQEYLLKEVQKVYRMQGVEIGDKHVEVMVRQMLRKVRVA
DAGDTEVLPGSLLEIHQFRDANREVLLEGNQPAVGRPVLLGITKASLETDSFLSAASFQE
TTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGMQKYRKITAKTDEPVDELVESNFTE
EITQ
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
ttgttagatgttaacaattttgaatttatgaaaattggtttagcttcaccggataaaatc
cgttcttggtcttatggtgaagtcaaaaagccagaaacgataaactatcgtacattaaaa
ccagagaaagatggtctattttgtgaaagaatctttggaccacaaaaggactgggaatgt
cactgtggaaaatacaaacgtgttcgctataaaggtgtcgtttgtgaccgctgtggtgta
gaagtaaccaaagcgaaagtacgtcgtgagcgtatggggcacattgagcttgctgcccca
gtttctcacatttggtatttcaaaggtatccctagccgaatgggtcttgttcttgatatg
tctccaagagctctagaagaagttatatactttgcggcatatatcgtgacagactctgga
gatacagcgctagaaaagaaacaacttctttctgagaaggaataccgtgcttatcgtgat
aagtatgggcaaagcttccaagctcagatgggagcagaggcaattcgtaaacttttacaa
gatatcgatttagataaagaagttggattgttgaaggaagaactgaaaactgcacaaggt
caaagaagaactcgtgccattaaacgtctagaagtgttagaagcattccggaattctgga
aatgagccttcttggatgattttagatgtgctaccaatcattccgccagaattacggcca
atggtccaattggatggtgggcgattcgctacatctgacttaaatgatctatatcgtcgt
gttattaaccgtaataatcgtttaaaacgtttattagatcttggggcaccaagtattatc
gttcaaaacgaaaaacgtatgcttcaagaagcggttgatgcgttgattgataatggtcgt
cgtggacgtcctgtcacaggaccgggtaaccgtccattgaaatccttgtctcatatgttg
aaagggaaacaaggtcgtttccgtcaaaacctattaggtaagcgtgtggactactctgga
cgttctgttatcgtcgtaggtccacatttgaaaatgtaccaatgtggtcttccaaaagaa
atggcagtagagttgttcaagccatttattatgaaagagctagtagccaaaggccttgct
cataatattaaatcggcaaaacgtaaaattgaacgcttacacccagaagtttgggatgta
ctagaagaagtgattaaagagcatccggtattactaaaccgtgcccctacgcttcaccgt
ctaggtattcaagcgttcgaaccaacattggtagagggtcgtgctattcgtcttcatccc
ctcgtttgtacagcgtataacgccgactttgatggggaccaaatggcggttcacgtaccg
ttatcagcagaagcacaagcagaggcaagaatcttaatgcttgctgcccaaaacattcta
aacccgaaagatggtaaacctgttgttacaccatctcaggatatggttttaggtaattac
tacgttacgttagaacgtaaggacgccgttggggaaggaatggtctttaaagatctgaat
gaagcattaatcgcctatcaaaatggatatgtacacttgcatactcgtattgcggtatat
gcaggatctttaggaaaccaaacctttacggaagaacaaaacacgaagctattgttaaca
acagttggtaagcttatattcaatgaaacattacctagttctttcccttacatgaatgag
cctacacaaacgaatctggaagtgaagacaccagaacactactttgtggaaaaaggaacg
aacattaaggaagagatagcgaaacgtgacattatcccaccattcaaaaagggaattttg
ggtaacattatcgcagaggtatttaaacgatttaagattagtgaaacgtcaaaaatgctt
gaccgaatgaaggatcttggctttagctactcaacgaaagcaggtattacggttggggta
tctgatatcgttgtattaggagataagcaggagattttagacgaagctcagacaaaagta
gataaagttctgaaacaattccgtcgcggtttaattacggaggaagagcgttacgaccga
gttatcgctatctggtctaaagcaaaagatgatatccaagaaagattgatgaaatccttg
gatccacgcaacccaattttcatgatgagtgattccggggctcgtggtaacgcatctaac
tttacacagcttgcaggtatgcgtggtctaatggccaacccagctggtcgaattattgag
ttaccgatcaagtctagtttccgtgaaggcttaacggtattagagtactttatttctaca
cacggtgctcgtaaaggtctagcagatacagccttgaaaacagccgattctggttactta
actcgtagattggttgacgtcgctcaagatgttatcgttcgtgaagaagattgtggcacc
gatcgcggtctaactgttcaatcgattaaggaaggaacagaaatgatcgagccgttgatt
gaccgactaattggaaggacatccttccaaaccatctaccacccagaaacaaaagaattg
cttgccgaacgtaatgaagtaattacagaggataaagcaaagcaaattgtcgatgcggga
attgaacagcttatgatacgctctgtcttcacgtgtaatacgaagcatggtgtatgtaag
aaatgttacggtcgtaacttagctacgggtgatgaggtagaagtaggagaagcagttggt
attatcgcagcacagtccatcggggaacctggtacacagcttacgatgcgtaccttccac
actggtggggtagctggagacgatatcacgcaaggtttacctcgtatccaagagctattt
gaagcccgtaacccgaaaggtcaggccgtcattagtgaaatccatggtacggttcaagac
attaatgaagtcaaagacaaacaagaaattgtgattcaaggcgcagtagaaacaaaatct
tataccgctccatatggtgcaagggtaaaagtttctattggtgatgaagtcattgcaggt
caagagctgacagaaggttctgtagaccctaaagaactattgaaaattcaaggtatcgat
ggcgtacaagaatatctactcaaagaagtacaaaaagtttaccgtatgcaaggggtagaa
atcggagataaacacgtcgaggttatggtaagacaaatgcttcgcaaagtacgtgttgct
gacgctggtgatacagaagttttaccaggttcactcttggaaatccatcaattccgcgat
gcaaacagagaagtgttattggaaggaaaccaacctgctgttggtcgcccggtacttctt
ggtattacaaaagcatctcttgaaacggattccttcttgtctgccgcatccttccaagaa
acaactcgtgtcttgacagatgcagcgattaaaggaaaacgtgatgaattgctaggactg
aaagagaatgtaattattgggaaattggttcctgccggtacaggtatgcaaaaataccgt
aagataacggcaaaaacagatgagccagtagacgaactagttgaatcgaatttcacagaa
gagatcactcagtag
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