Radiobacillus deserti: FN924_07560
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Entry
FN924_07560 CDS
T06091
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
aqt
Radiobacillus deserti
Pathway
aqt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aqt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FN924_07560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aqt03019
]
FN924_07560
Messenger RNA biogenesis [BR:
aqt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FN924_07560
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
DUF4453
Motif
Other DBs
NCBI-ProteinID:
QDP40036
UniProt:
A0A516KFC6
LinkDB
All DBs
Position
complement(1429931..1431598)
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AA seq
555 aa
AA seq
DB search
MKFVKNDQTAVFALGGLGEIGKNTYGVQFQDEIILIDAGIKFPEDELLGIDYVIPDYSYL
VQNQDKIKGLFVTHGHEDHIGGIPYLLRQLNIPIYAGKLAIGLIKNKLDEHGLLRNATLN
IVQEDDIIKFRKTSVAFFRTTHSIPDSYGIVVKTPPGNVVHTGDFKFDFTPVGEPANITK
MAEIGKEGVLCLLSDSTNSEVPGFTMSERVVGESINDIFSRVTGRLIFATFASNIYRLQQ
VVESAVRHNRKVAVFGRSMEAAITLGQELGYIQAPKDTFIDAQQINRLPAHEVTILCTGS
QGEPMAALSRIANGTHRQIQMIPGDTVVFSSSPIPGNTVSVSKTINMLYRAGADVIHGKL
NDIHTSGHGSQEEQKLMLRLIKPKYFMPIHGEYRMLKEHTKLAEACDIDPSHSFVMDNGD
VLALGKDSAMIAGKIPSGSVYVDGSGIGDIGNIVLRDRRILSEEGLVIVVVSINMKEFKI
ASGPDIISRGFVYMRESEDLINEAQKIVSSHLHKVMERKTTQWSEIKNEITDTIAPFLFE
RTKRKPMILPIIMEV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgaagtttgtaaaaaatgatcaaacagcggtatttgcactaggaggactaggcgaaatc
gggaaaaatacgtacggtgttcaattccaagatgaaatcatcttgattgatgctggtatt
aaattcccagaggacgaattgcttggtatcgattatgtcattccggactactcctacctc
gtgcaaaaccaagacaaaattaaagggctatttgttacacacggacacgaagatcatatc
gggggaatcccatatcttctccgtcaactaaatatccctatatatgctggaaaacttgcg
attggattaattaaaaacaaattagacgagcacggtcttttacggaatgcgaccttaaac
attgtgcaagaggacgacatcattaagttccgtaaaacatcagttgcattttttagaaca
acacatagcatacctgactcctacggaattgttgtaaagacacctcctgggaatgttgtc
cacacaggtgatttcaaatttgatttcactccagtaggagaacctgccaacattacaaag
atggcggaaataggaaaagaaggcgttctttgtttattatcagatagtacgaatagtgag
gtacctggtttcaccatgtcagaacgagtggttggtgaaagcattaatgacattttctca
agagtcactggccgattaatctttgctacctttgcatcaaacatctacagacttcaacaa
gtcgtagaatcagcggttcgccacaatcgtaaagtggctgtctttggacgtagtatggaa
gctgctattacgttaggtcaagaattagggtatattcaagctcctaaagatacgtttatt
gatgcacagcagattaatcgtttaccggcacacgaagttacgatcttgtgtacaggttct
caaggggaaccaatggcagctctatcacgtattgcaaatggtacacaccgtcagattcaa
atgattcctggcgacacagtcgtattctcatcctctccaatccctggcaacacggttagc
gttagtaagactattaacatgctttatcgagcaggtgctgacgtaattcacggaaaactt
aatgacatccacacctctggacatggtagtcaagaagaacaaaaactaatgcttcgattg
attaaaccgaaatactttatgccaatccacggggaatatagaatgcttaaagagcatacg
aagttggcagaagcttgtgacattgatcctagtcattcctttgtaatggataacggtgat
gtgttagctcttggcaaagacagtgcaatgattgcaggaaagattccgtcaggatccgtt
tatgtggatggaagtggaattggtgatattggaaatattgtgctacgtgaccgtcgtatt
ctttcagaagaaggacttgtcattgtagtggtaagtattaatatgaaagaatttaaaatt
gcatcaggtcctgatatcatttcaagaggatttgtgtacatgcgagagtctgaagactta
atcaatgaggcacaaaagattgtttcttctcaccttcataaagtcatggaaagaaaaaca
acacaatggtctgaaattaaaaatgaaattacagatacaattgcaccattcttatttgaa
agaacaaaacgaaaaccaatgattttacctataatcatggaagtataa
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