Radiobacillus deserti: FN924_16940
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Entry
FN924_16940 CDS
T06091
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
aqt
Radiobacillus deserti
Pathway
aqt03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
aqt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
FN924_16940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aqt03400
]
FN924_16940
Enzymes [BR:
aqt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
FN924_16940
DNA repair and recombination proteins [BR:
aqt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
FN924_16940
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
QDP42244
UniProt:
A0A516KLH6
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Position
3221473..3223293
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AA seq
606 aa
AA seq
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MQPIPSTDIPQGKEWGYEVKYDGFRASLHIDVSSIQLVSRNQVNLSANFPEIISYVEENL
EKYLPFLPIELDGEIAILNTKLQSNFYLLQQRGRLKAKAKIADAAKERPAHFLAFDILRW
KGKTLLNEAFSQRKQKLEVFFQSILPTPTVLWGERIGYVNTFSDPSHLWFLVTEEKGEGI
VAKRLTSTYIEGKSHRDWFKIKNWRTIRGFITGYDQKNGYFTLSVYKNDVIHPLGKFKHG
IPDTELATLKQFVSKNGTKKGDRWHLAPAICCEVHCLGVKDDDLREPEFHQFRLDITPEE
CTLQTIAENLAMFPEDLDLTKKDKMFWPTPQFSKLDLLLYLRDIAPYMLPFLKNKVLTLI
RCPDGVEGEFFYQKHLPSYAPDRLAGPKTEDGILQVCRDVEGLLYLGNHGAMEYHVPFQK
IGDDYPDEIVFDLDPPSVEEFSIAVFAAQLIKELLDHLHLIAFVKTSGNKGLQIYIPIPE
KSLSYEETAQFTMALALLLENKYPDLFTTERLKKNRKNRLYIDYIQHGKDKTLVSPYSPR
KTENGTVSTPLFWDEVTEALQPSQFTIQNVVERVKEKGCPFITYHQARGKQNLKLLREFT
TTSMKP
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atgcagccaataccaagcacggatatccctcaaggaaaagaatgggggtatgaagtaaaa
tatgatggatttcgagcatccttacacattgatgtcagctccatccaattggtcagtcga
aatcaagtgaatttatctgcaaattttcctgaaattatctcctatgtagaggagaatttg
gaaaaatacttaccattcctacctattgaattagatggagaaatcgccattttaaatacg
aagcttcaatcgaatttctacttgctacagcagcgtggaagacttaaagctaaggcgaaa
atcgcagacgcagctaaggagcgccctgcccatttcctagcttttgacatcctgcggtgg
aagggaaaaacactgctaaacgaagccttttcacaacgaaaacaaaaactggaagtcttt
tttcaatctattctacccactcccaccgtcttgtggggggaacgaatcggttatgtaaat
acgttctcagacccttcacacctatggtttttagtgacagaagaaaagggcgagggaatc
gtagcaaaacggctaaccagtacgtacatagaagggaaaagccacagggattggtttaag
ataaagaactggcggacaattcgaggatttatcacaggttatgatcaaaaaaatggttac
tttaccttatccgtatataaaaacgatgtcattcatccgttaggtaaatttaagcatggc
atacctgacacagagttagctacattaaaacagttcgtgtccaaaaacggaacaaaaaaa
ggagacagatggcacttagctccggctatttgttgtgaagttcactgtttaggcgttaag
gatgatgatcttcgcgaaccagaattccaccagtttcggcttgatataacgccagaggag
tgcaccctacaaacgatagcggaaaacctagccatgtttccagaggatcttgatttaaca
aaaaaggataagatgttttggccaacacctcagttttcaaaattagacttactcctttat
ttacgagacattgcaccttatatgctcccctttttaaaaaataaagtattaacattaatt
cgctgtccagatggtgtagaaggggaatttttttatcaaaagcacttaccttcctatgcg
ccagaccgattggctggaccgaagacagaggatggtattttacaggtatgtagagatgta
gaaggcctattatatcttgggaatcatggtgcaatggaataccatgttccgtttcaaaaa
atcggggacgattatccggacgaaattgtgtttgacttagacccaccctcggtagaggaa
ttttctattgctgtttttgcagcccagcttatcaaagagctgttagaccacctccactta
attgcttttgttaaaacgtcaggaaataaagggctacaaatttatatcccgattccagaa
aaaagcctgtcctatgaagaaacggcacaatttacgatggcattagcgctgttattagaa
aacaaatacccagatttattcacaactgaacgattaaagaaaaatcggaagaatcgttta
tatatcgattatattcaacacgggaaagacaaaaccttagtttctccctattccccaaga
aaaaccgaaaatggaacggtctctactccactgttttgggatgaggtgacagaagcactt
caaccaagccaattcactattcagaatgttgtagaacgtgttaaagaaaaagggtgtccg
tttattacctatcatcaagcaagaggtaaacagaacctaaaactactccgcgaattcacc
actacgagcatgaaaccatag
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