Amphimedon queenslandica (sponge): 100634948
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Entry
100634948 CDS
T02284
Name
(RefSeq) collagen alpha-1(I) chain-like isoform X1
KO
K19719
collagen type II alpha
Organism
aqu
Amphimedon queenslandica (sponge)
Pathway
aqu04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
aqu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100634948
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
aqu00536
]
100634948
Glycosaminoglycan binding proteins [BR:
aqu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100634948
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
100634948
NCBI-ProteinID:
XP_003388783
UniProt:
A0A1X7U7U7
LinkDB
All DBs
Position
Unknown
AA seq
1330 aa
AA seq
DB search
MIMAAQALILALIGVSLCTLAYGAAPFTKRQDGVTDTDPFGDPGPPGPPGPNLAPVPGPP
GPPGSRGSDGFDGLDGSAGSDGATGPPGDPGVPGPIGPPGDPGAPAFIPPPEQGIKGPII
IPIVGDRGDRGQSGVPGRKGVPGPPGHIGPKGTRGHRGMDGEKGPAGDQGEVGKEGVIGA
SGPNGYPGDPGPTGQIGLPGIPGFPGLQGAKGNRGADGAAGEPGDQGPNGPPGEVGNIGP
EGPRGPDGDVGAKGGDGETGADGPAGPPGPDGFPGQQGAPGAPGPQGPQGPNGPTGPPGA
PGKRGPAGNQGPPGSDGSPGSPGSPGTPGQNGATGPPGPAGAKGSMGSPGRTGLAGIRGQ
TGEPGDTGPRGQPGRKGNNGADGDKGNTGPQGKAGERGEKGFRGANGAPGDQGEDGKQGN
AGPAGPRGAKGPPGHGGVPGENGKDGDKGEPGEKGEKGAQGIPGLPGYDGVPGGAGVPGR
PGARGAKGARGDRGQPGVNGPDGTDGIQGPPGPSGIPGPHGPAGPVGDTGAPGQKGSRGA
DGQPGAAGPPGQPGETGSAGDPGNKGDKGVPGVTGKAGDQGATGASGVHGPAGDQGTKGA
RGGAGPTGAKGATGAKGRAGETGQIGAAGEPGQPGKQGPQGGVGLPGTTGAHGERGLQGK
TGSPGPAGARGGPGGRGKKGPQGRPGFQGVQGDVGQQGPDGAPGRAGPLGAAGNPGPNGF
QGATGGPGPQGPAGGAGATGDKGTVGPQGVAGGPGPAGRPGDTGAAGERGKKGPTGSQGS
RGPSGAPGKPGLPSSQGSQGPAGASGAAGVPGLPGKTGPTGPKGPQGLPGPAGSKGARGV
PGQAGPKGPRGPAGSRGEQGKQGDAGPTGKAGADGEKGRAGAPGEPGEAGVPGPQGSKGA
QGKSGIPGRPGAKGEVGYPGLIGAKGFMGENGAKGPKGDKGPKGERGPAGPKGANGDRGG
QGPDGPTGSPGAQGEPGQKGPQGYTGLPGEDGKRGPPGTDGRPGDPGKEGPAGAQGDPGP
AGGPGAPGARGDQGPKGVPGDKGDQGDRGLPGHKGDPGLQGGVGAPGQAGPQGATGPQGP
QGPEGPKGEQGDRGNRGGFGPQGEKGSPGEQGLHGSVGPVGPAGPPGPAGAPGEPYKGPA
FYRSKFDEKQDISQLKKQFLFVELKSIEEEMNKMGINEKLPRTCEDLNMQHPEYSNGEYT
IDPNMGSTKDSFKSFCEFKSSTIRTCVNNETSTSQLGYLHLLHTHVSQTIQLPCGAKGPF
YLQPYDSDTAIEVPLKDRKDLKITLSGCSPFSMLREVEFVSDNVNQQMLPFTHSINVNNQ
DYYFKDICFY
NT seq
3993 nt
NT seq
+upstream
nt +downstream
nt
atgatcatggcagctcaggctcttattctagcattaattggtgtctcactttgcacctta
gcatatggtgcagctccattcacaaagagacaggacggagttacagacacagacccattt
ggagaccctggacctccaggaccccctggaccaaatttagctcccgtccctggtccccct
ggacctcctggttcacgtggttctgatggatttgatgggcttgatggatctgctggatca
gatggtgctactggaccacctggtgaccctggtgttccaggaccaattggaccccctgga
gatcctggtgcacctgctttcattccaccacctgagcaaggcataaaaggaccaatcatc
attccaattgttggtgaccgtggtgaccgtggacagtctggtgtacctggtcgtaaagga
gtacctggacctcctggtcacattggacccaagggaacaagaggacacaggggaatggat
ggtgagaaaggaccagctggtgatcaaggtgaagtaggaaaggagggtgtaattggtgcc
agtggacccaatggatatcctggtgaccctggaccgactggacaaattggtctacctggc
atccctggattccctggattacaaggggctaagggaaatagaggagctgatggtgctgct
ggtgagcctggtgaccaagggccaaatggaccaccaggagaagttggcaacattggacca
gagggaccaagaggtcctgatggagatgtaggagctaagggaggggatggtgaaacagga
gccgatggaccagcaggaccaccaggacctgatggattccctggacaacaaggagcacct
ggagcccctggaccacaaggacctcaaggacccaatggaccaactggacctcctggtgca
cctggtaaaagaggaccagctgggaaccaaggaccacccggttctgatggatccccgggt
tcacctggttcccctggaacaccaggacagaatggtgcaacaggaccacctggacctgcc
ggtgctaaaggatcaatgggatcacccggtcgtactggactagctggaataagaggacag
actggagaacctggtgacactggaccacgtggacagcctggtcgcaagggaaataatgga
gctgatggtgacaaaggaaacactggccctcaaggaaaagctggagaaagaggagagaaa
ggtttcagaggagctaatggtgcccctggagaccaaggtgaagatggaaaacaaggaaat
gctggcccagctggtccacgtggtgctaagggaccacctggccatggaggagtacctgga
gaaaatggtaaagatggtgataaaggagagccaggagagaagggagagaaaggagcacag
ggtattcctggccttcctggatatgatggtgtacctggtggtgctggtgttccaggcaga
ccaggtgccaggggagctaaaggagcacgaggtgaccgtggccaaccaggtgtaaacgga
cctgatggaactgatggtatacaaggaccacctggacctagtggtatacctggtcctcat
ggacctgcaggacctgttggagacactggagcacctggacaaaaaggatcaagaggagct
gatggtcaaccaggtgctgctggtcctccaggacaaccaggagagactggatcagctggt
gaccctggaaacaaaggagacaagggtgttcctggtgttactggcaaagctggagatcaa
ggagcaactggtgcctctggtgtacacggacctgctggtgaccaaggcactaagggagca
aggggtggagctggaccaactggagctaaaggtgccaccggagcaaagggtagagccggt
gagactgggcaaatcggagctgctggtgaacctggtcaacctggtaaacaaggtccccag
ggaggtgttggtctccctggtaccactggagctcatggcgagcgtggcttacaaggaaag
actggcagtcctggaccagctggagctaggggaggacccggtggtcgtggaaagaaggga
cctcaaggtagaccaggattccaaggagtacagggtgacgttggacagcagggacctgat
ggagcacctggaagagctggtcctttaggagctgcaggtaatcctggacctaatggtttt
caaggagccactggcgggcctggtccccagggaccagccggtggtgctggtgctactgga
gataagggaactgttggaccacagggtgtagctggaggacctggaccagctggaagacct
ggtgacactggtgctgctggagagagaggaaagaagggacccactggatcccaaggttca
cgtggtccatcaggtgctcctggtaaacccggcctacctagctcacaaggatctcaagga
ccagctggagcatctggcgctgctggagtacctggtctaccaggaaagacaggacctact
ggccctaagggacctcaaggtctacctggaccagctggttctaaaggtgcacgtggtgtt
cctggacaagcaggacctaaaggtccaagaggacctgctggatcccgtggggaacaagga
aaacaaggagatgctggcccaaccggtaaagctggtgctgatggagagaaaggtcgtgcc
ggagcacctggtgagccaggagaggctggagtacctggacctcagggtagcaagggagct
caaggaaaatctggcattccaggaaggcctggtgctaagggtgaggtaggataccctggt
ttgattggtgctaaaggattcatgggtgagaatggagctaagggacctaaaggtgacaaa
ggacccaaaggagaaaggggaccagctggacctaaaggagccaatggcgatcgtggcggt
caaggacctgatggacccacaggttcacctggtgctcaaggagagcccggacagaaagga
ccccagggatacactggactaccaggagaagatgggaagagaggaccacctggcactgat
ggacggcctggcgatcctggaaaggaaggaccagctggcgctcaaggtgatcctggccca
gctggtggccctggagctcctggtgccagaggtgatcaagggcctaagggtgtaccagga
gacaaaggagatcaaggagatagaggtctaccaggacacaagggagaccctggtctacag
ggaggagttggggcaccaggtcaagccggaccacaaggtgctactggaccacaaggaccc
cagggaccagagggacccaaaggagaacaaggagatagaggaaacagaggaggatttggt
cctcaaggagagaagggatcacctggtgaacaaggtctacatggtagcgttggacctgtt
ggacctgccggaccacctggacccgcaggagcacctggtgagccatacaagggaccagca
ttctaccgcagcaagtttgatgagaagcaagacatcagccagcttaagaaacaatttttg
tttgttgagttgaagtcaattgaggaggaaatgaacaagatgggaatcaacgagaagctc
ccacgaacctgtgaagaccttaatatgcaacatcctgagtacagtaatggcgagtatacc
attgatcctaatatgggatcaaccaaagactcttttaagtccttctgtgagttcaagtca
tctaccatcaggacgtgtgtaaacaatgaaacatcaacatctcaattgggatacctacac
ttgttacatacgcacgtttcacagaccatccaattgccttgtggagcaaagggaccattc
tacctccagccttatgatagtgacactgccattgaagttccattgaaagacaggaaagac
cttaagatcaccctctctggctgtagtccattctcaatgttgcgtgaagtagagtttgta
tctgataatgtcaaccagcaaatgctccctttcactcactcaatcaatgtcaataatcaa
gattattatttcaaagacatctgtttctattaa
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