Amphimedon queenslandica (sponge): 100636659
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Entry
100636659 CDS
T02284
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm2
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
aqu
Amphimedon queenslandica (sponge)
Pathway
aqu03018
RNA degradation
aqu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aqu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100636659
09123 Folding, sorting and degradation
03018 RNA degradation
100636659
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aqu03019
]
100636659
03041 Spliceosome [BR:
aqu03041
]
100636659
Messenger RNA biogenesis [BR:
aqu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100636659
mRNA degradation factors
5'-3' decay
Lsm complex
100636659
Spliceosome [BR:
aqu03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
100636659
Complex C
U2 snRNP components
100636659
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
DUF1256
Motif
Other DBs
NCBI-GeneID:
100636659
NCBI-ProteinID:
XP_003385951
UniProt:
A0A1X7V3T0
LinkDB
All DBs
Position
Unknown
AA seq
112 aa
AA seq
DB search
MPLFYSFFKSLVGKEVIVELKNDLSIHGTLHSVDQYLNIKLTDISIPDPDKYPHMLSVKN
CFIRGSVIRYVQLPAEEVDTGLLQDATRKELAQGKQQPAASAGSAAPAVTTT
NT seq
339 nt
NT seq
+upstream
nt +downstream
nt
atgccactgttctattcattttttaaatcattggtggggaaagaagtcattgtagaacta
aaaaatgatttgagtattcatgggacactgcattcagtggatcagtatctcaatatcaaa
ctgactgatattagtatcccagatccagacaagtatccgcacatgctctcggtcaagaat
tgttttatacgtgggtcggtgatacggtacgtccagttgccagccgaagaggtggacacc
ggactattgcaagacgcaactcgtaaagagttggcacaaggaaaacagcagccggctgct
agtgcaggtagtgccgcccctgcagtgacaaccacttaa
DBGET
integrated database retrieval system
