Amphimedon queenslandica (sponge): 100636794
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Entry
100636794 CDS
T02284
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
aqu
Amphimedon queenslandica (sponge)
Pathway
aqu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aqu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100636794
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aqu03021
]
100636794
03019 Messenger RNA biogenesis [BR:
aqu03019
]
100636794
Transcription machinery [BR:
aqu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100636794
Messenger RNA biogenesis [BR:
aqu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
100636794
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
zf_PCFS4
Pcf11_C
Pfc11_Clp1_ID
Motif
Other DBs
NCBI-GeneID:
100636794
NCBI-ProteinID:
XP_019854910
UniProt:
A0A1X7UD39
LinkDB
All DBs
Position
Unknown
AA seq
897 aa
AA seq
DB search
MADLESQSTVLEDYESVLEELTFNSKPIINMLTMKADKYRIYAPAIVELVKTRFFKVRQE
CKIPTLYLMDSMIKNLGGEFLEELTKGIVGVFCHAFEALNDPKIRIALYKLRQTWLPYIP
VRKLAAIDEHIHAIDPNWPITAQEPSSPTIFLNPKFLEPKEDSAKRNSGKSSTERRSSPL
PKKSILKPSLPAASSKPSSNSLAPPTIENKGRRSPQNTLVDKQASKSPSPMPSSSMKHSK
PTKSPSKDSGANDYRIPKKKKVQFQSPPTSSSSSSLSSTSSLKPVDSFASSLSQPAPSQE
VSLAMKDKRKKLLAQQRQIKTNKQLSMGILPPLQDDVSLDRVIQKHKRSSSPSPEKRPSE
SVVKRPRSASPTVTVDTRGDEVPVESDSSAGIAGRKHRNEDTSIEFDANKRIKTEPIEDL
VLVTDNNPMKRIGGGGGGMDNDRTTDINDLLPDFILKKQEYMLEQARKRLQSDTLTSEQR
DQLLRQVDQLLELQATHKEERTDKFLINDKSVSHGDSVSRNLDSVSFSHTPVTNSVSHFN
DSVSHSHDFVSHPHDFVPHPHDSASHSRDLVSHPRPSAEIQPHRTLLPFPPPGDYIPPQR
DFPPPRGLGRPPPPRANFRRRGGRGFKRGRRDRAFREHSPPLMRRGPGGMRDERGPPPPH
HLSRHPLPQESEGPALVSDLYEKLRSSGLLLPPDGEAGSHPPPVRRGPALPMIRLNIREL
KMDYEGLHMLLHEGEPCTSCGLRFREDQREEYQAHLDWHYQENRLDKDGSRATMRNWFLH
PDDWITFDGSSLINQNEPLLSMEQESKEDSVGRDENKSAGISCQVLPGEDTQVCGVCHEQ
LEQFWEEDEEEWHFKDALRTGDGVLYHSYCYVDSKESLGLMSVDSSPISETAKPLNI
NT seq
2694 nt
NT seq
+upstream
nt +downstream
nt
atggctgacctggagtcccagtctactgtactagaggactacgagtccgtcttagaagag
ctcaccttcaactcaaagccgatcatcaacatgctgaccatgaaggcagacaaatatcga
atctacgcccctgccatagtcgagctggtcaagacccggttcttcaaggtgcggcaagag
tgcaagataccaaccctctatctcatggactccatgatcaagaacctgggaggggaattc
ctagaggaactcacaaaagggatcgtgggcgtgttctgccacgccttcgaagcactgaat
gacccaaagattcgtattgctttgtataaactgaggcagacatggctcccgtacatacct
gtcaggaaactggcagctatagatgagcatattcacgctatcgatccaaactggccaatc
actgctcaggagccctccagtccaactatattcttgaatccaaagtttcttgaacctaag
gaggactctgctaagagaaattcggggaaatcgtcaactgaaagaagatcatctccactt
cccaaaaagtcgatattaaaaccatcattaccagcagcgtcatctaagccttcaagcaac
tcactggctcctccaaccattgagaacaaaggcagaagaagcccccagaacactctcgtc
gataaacaagcatcaaaaagtccctcaccaatgccttcctcgtctatgaaacacagcaag
cctacaaaaagtccaagcaaagactcaggagccaacgattatcgtattccaaagaaaaag
aaagtacagtttcaatcgccgccgacctcctcttcctcttcctctctctcttctacttct
tccttgaaacctgtcgattcgtttgcttcctctctctcccaaccagctccttctcaagaa
gtctctttggctatgaaggacaaacgtaagaagctccttgctcaacaaagacaaatcaaa
acaaacaagcagctctcgatggggatactcccaccattacaggacgacgtctctctcgat
cgcgtcatacagaaacacaagcgaagctcaagtccaagtcccgagaagagaccgtctgag
tctgtggttaaacgcccacgcagtgccagtcccactgttactgtggatacaagaggtgat
gaggttcccgtggaaagtgattccagtgcaggcattgccggtaggaagcatagaaatgag
gatactagcattgagtttgatgctaataagcgaatcaagacagagcctattgaagacctt
gttctagttactgacaataatccaatgaaaagaataggaggaggaggaggaggaatggat
aatgacaggactacagatatcaatgatcttctacctgactttatactcaagaaacaagaa
tatatgttggagcaggctagaaagagattacagtctgacacactaacatcagagcaacgt
gatcaacttctgagacaggttgatcaactcctcgagttgcaggcaactcataaagaagag
agaactgataagtttttgattaatgataaatctgtgtcacacggtgattctgtatcacgc
aatcttgattctgtatcattttcgcacacacccgttactaattctgtatcacattttaat
gattctgtatcgcactcacatgattttgtatcgcacccacatgattttgtaccgcatccc
cacgattctgcatcacactcacgtgatcttgtatcacaccctcggccgtcagccgagatc
cagccccaccgcacgctccttcccttccccccacctggagattatatccctcctcagaga
gattttccccctccaaggggtctgggacggcctccgccaccgagggcgaatttcaggcga
cggggcgggagggggtttaagcgtgggaggcgagaccgagccttcagggaacactcacct
cctctaatgagaaggggcccggggggtatgagagatgagagaggtccccctcctcctcat
catctctctcgtcatcctcttcctcaagaaagcgaaggtcctgctcttgtgtctgatctt
tatgagaagttaaggagtagcggcctcctccttcctcctgatggtgaggctggcagtcac
cctccgcctgttcgtagaggaccagcactgcccatgattagattaaatatcagagaattg
aaaatggactatgagggtctacacatgttgcttcatgaaggtgagccgtgcacttcgtgt
ggtctgagattcagagaagatcaaagggaagagtatcaggctcaccttgactggcactat
caggagaacaggctggataaagatggaagcagggctacaatgaggaactggttcttacat
ccagatgattggatcacttttgatggatcatcacttatcaatcagaatgagccattatta
tcaatggaacaagaaagtaaagaggattctgttggtagagatgaaaacaaatctgctggt
ataagctgtcaagttcttccaggggaagatactcaagtgtgtggtgtatgtcatgagcag
ttggagcagttctgggaggaagatgaagaggagtggcactttaaagatgcacttcgtaca
ggagatggagtattgtatcacagttactgttacgttgattcaaaagagtccttaggatta
atgtctgttgattcgtctccaatcagtgagacagcaaaaccattgaacatatga
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