Amphimedon queenslandica (sponge): 100637401
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Entry
100637401 CDS
T02284
Name
(RefSeq) exosome complex exonuclease RRP44-like
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
aqu
Amphimedon queenslandica (sponge)
Pathway
aqu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aqu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100637401
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aqu03019
]
100637401
Messenger RNA biogenesis [BR:
aqu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
100637401
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
PIN_4
OB_Dis3
Rrp44_CSD1
Rrp44_S1
CSD2
Dis3l2_C_term
Motif
Other DBs
NCBI-GeneID:
100637401
NCBI-ProteinID:
XP_003382712
UniProt:
A0A1X7VTN2
LinkDB
All DBs
Position
Unknown
AA seq
948 aa
AA seq
DB search
MLTSKTFVKKTKKGNVLKVVREHYLRDDVHCGVRDCSLCKDCPDGPSLDPSPLTHSTLCQ
YPHFLLPDTNICLHQIDFLEDPSVHNVILTQVVLQEVRNINPGIHRRLRDIVSNKARKFY
VFSNEHHKEAYVERRENEGANDRNDRAIRACCQWYNIHLAKGLETTPPPRVILLTNDREN
KRRASAAGIESYTVLEYVQSLTVSSHLLDRLATIADGEDSDKSSTRKKVYFPEHLALSVI
QRGLKTGKYLQGAFRGSRENYLEGFVSIPSLEKWVLVQGLENMNRAVHDDVVAVELFPES
SWTSPCGIIEADLTSNKEEEETDTAQLPAGKTSDPSLVQPTGKVVGIIKRNWRPYCGTLL
PLQDMKGFRHTFVPAERRIPRIRIETRQGPNLLGKRIMVSIDAWSRLARFPSGHFVKELG
PIGDRETENEVLLLEHDVPHLPFSPAVLKDLPQTPWVITDEEISKRLDLRHLSICSVDPP
GCTDIDDALHYRELDNGNVEVGVHIADVSHFIRPKTALDEEASNRGTTVYLAEKRIDMVP
ELLSSNLCSLRSGEERLAFSVLWEMSPDDAHIVSTRFVKTVIESKESLTYAEAQMKIDDK
SLRDDVTTSLRGLNSLAKILKGRRLEAGALTLASPEIRFEIDSETHDPIDLINKELKETN
SLVEEFMLLANVSVAEAIYEAFPDCALLRRHPPPPTSNYDILLKAAKGKGFDLIVDSAKS
LADSLEMARIPDNEYFNTLLRIMATRCMMQAVYFCSGSITYKEYHHYGLAAPIYTHFTSP
IRRYSDIIVHRLLAVSIDSDVTYPLLLDKHHTQQLSNHLNHRHKMAQYAQRSSVSLHTHL
FFKEKDKVEDGFVLLVRRNAIQVIIPAYGIEGSIFFDEHGQSALQYDESLLSLTVSGTKF
CLFDKVVVRIAVEKKDLQTSKLALCLVSPVISGSNGVESLKAKKKKHK
NT seq
2847 nt
NT seq
+upstream
nt +downstream
nt
atgctcacttctaaaacttttgtgaagaaaaccaagaaaggaaacgtcctaaaggtcgtg
agggagcactaccttagagatgacgttcattgtggagtcagagactgctcactgtgcaaa
gactgcccggacggaccttccctcgacccttctcccctcacacactccactctctgccag
tatcctcatttcctactaccagataccaacatatgtctccaccagattgatttccttgag
gatccttcagtacacaatgttatattgactcaggtcgttctacaagaagtccgtaacatt
aatcctgggattcacaggaggctacgagatatcgtctcaaacaaggcaagaaagttttat
gtcttttcaaacgagcatcacaaagaggcgtatgttgagcgacgagagaatgagggagcc
aacgatcgtaatgaccgggcaattcgtgcctgctgtcagtggtacaacatacacttagca
aagggactggaaactacaccacctcctcgtgtgatactacttaccaatgatagagagaat
aagaggagggctagtgcagctggaatagaatcatacactgtattggaatacgtacagtct
ctcactgtctcctcccacttacttgataggcttgccaccatagccgatggagaagacagt
gacaagtcctcgactcgtaaaaaggtttattttccggagcatctggccctgtctgtgata
cagagaggcctcaagactggcaagtatctacaaggagcattccgagggtctcgtgagaac
tatctagaaggttttgtgagcattccatcactggaaaagtgggtccttgttcaaggactt
gagaatatgaatagagcagtccacgacgatgttgtagctgttgaactcttcccagaatct
tcctggacgagcccatgtggtatcatagaggctgatcttactagcaacaaagaggaagag
gagactgacacagctcaactgcctgctggtaaaacaagcgatccttctcttgtacaacca
actggtaaggtggttggtatcataaagagaaactggaggccatattgtggtacactctta
ccccttcaagacatgaaagggtttcgtcacacctttgtaccagcagagaggaggatacct
cgtatcagaatagaaacaagacaaggacctaacctactggggaagagaataatggttagc
attgatgcctggtcccgtttagctaggttcccttctggtcatttcgtaaaagaattaggt
ccgattggagacagagagacagaaaacgaagttctccttttagaacatgacgtacctcac
cttcctttctctcctgctgtcttgaaggacctcccccaaaccccctgggtcataacagat
gaagagatatccaaacgtcttgatcttcgtcacctctccatatgcagtgttgatccacca
ggctgtactgatattgatgatgctcttcattatagagaactggacaatggcaatgttgaa
gtgggtgtccatatagctgacgtgtctcatttcataagaccaaagactgctcttgatgaa
gaagcctctaatagaggtactacagtctatcttgccgaaaaaaggatagacatggtcccg
gaactcttgagctctaacttgtgctctcttcgctcgggagaggagaggttggccttctct
gtcctatgggagatgagccctgatgatgctcatattgtctccactcgttttgtaaagacc
gtgatagagtctaaagagtccttgacttatgctgaagctcagatgaagattgacgataag
agcctgagagatgatgtcaccactagtctcagaggactcaattctctggctaagatcctc
aaagggagacggttggaggctggagcactcactctcgcctctccagagataagattcgag
attgacagtgagacccacgacccgattgacctgattaataaagagcttaaagaaaccaac
tcactcgttgaggagtttatgttgctagccaacgtctctgttgccgaggccatatatgag
gcattcccagactgtgcgttgctgagaagacacccacctcctcctacctccaattacgac
attctcctcaaagctgcaaagggtaaagggtttgatttgattgttgatagtgccaagagt
cttgccgactccttggaaatggctcggataccggacaatgaatacttcaatactctcctt
cgtataatggctactcgctgcatgatgcaagctgtgtacttctgctctgggtccataact
tacaaggagtatcatcactatggtcttgccgctccaatatatactcacttcacgtctccc
attcgtcgttattctgatatcattgtccacaggctactggctgtatctatagactctgat
gtcacttatcctttacttttagacaagcatcacacccaacagctctcaaatcatctcaat
catcgccacaagatggcccagtatgcccagaggtcgtctgtctctctacacactcacctc
ttctttaaagagaaggataaagttgaagatggatttgtgttactagtaaggcgtaatgcc
attcaagtcattataccagcctatgggattgagggcagtatattttttgatgagcatgga
cagtctgctctccagtatgatgagtctctactgtcgctgactgtgagtggaactaagttt
tgtctctttgataaggttgtggtgaggattgctgtagagaaaaaggacctgcagacctca
aagcttgctctctgtttggtgtcacctgtcatcagtgggagcaatggagtagaaagtctt
aaagcaaagaagaagaaacataagtga
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