Amphimedon queenslandica (sponge): 100638776
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Entry
100638776 CDS
T02284
Name
(RefSeq) collagen alpha-1(I) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
aqu
Amphimedon queenslandica (sponge)
Pathway
aqu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
aqu00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
100638776
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
aqu00536
]
100638776
Glycosaminoglycan binding proteins [BR:
aqu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100638776
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
100638776
NCBI-ProteinID:
XP_011405131
UniProt:
A0A1X7UH82
LinkDB
All DBs
Position
Unknown
AA seq
1606 aa
AA seq
DB search
MRFLFLLSVLLVSAVAAEDCPIEVDLIPGLQSHTQIQNVTGVCMRRAAGAGDMAYSPPSG
GVIIPPSVSRNFTRRSYCILTILREANGNSNPVLHFSSGTTRVGDLSVINGTISHTLRGV
TAKFSGQYNTSKFQYITVCVNAETSEALLYIDCESSPRERVPFIQSAGGVLADGFTAIQS
GVNANDTFQGAVQMLAIIGCVEQRAQCLAEPSQCNLPKITLETALGILGSPTSPPSVIGS
GDRPTGPAVVIKGAKGQKGAPGDIVFGPPGLPGPAGPEGAPGSRGPPGLPGLPGRKGPRG
EPGLTGNIGGRGPPGPPGQPYIVNIPPGTGGSGPAPSAPSVKGPNKSPGSCLTGEPGPRG
PSGPQGRRGPPGNPGADGPPGPPGERGPQGTIGIPGAPGERGRNGEQGTSGPPGHPGPPG
PPGDKGQHGLPGPTGLQGLKGPTGMAGPPGNPGNPGSDGPPGQNGDPGPTGLPGNPGPRG
VVGSPGALGPPGPPGSPGELGEQGTKGARGSAGARGFPGGRGAPGSPGRDGSPGAPGQAG
QDGNSGRNGEQGPPGPEGLPGHTGPVGSTGAKGAAGRPGPPGAPGNPGEKGDKGDQGPRG
PYGHKGEKGNSGLPGNPGALGESGSLGLPGPPGDNGRDGDNGQPGAPGLPGASGPPGEAG
PDGPPGPQGVPGWPGSKGQKGVSGAPGQRGPRGNTGRRGLMGINGNPGPSGAQGPQGSRG
TPGPPGPQGNKGDRGTQGPPGSPGEQGFEGEAGQRGPAGQPGDAGVPGRDGEPGHSGPSG
DHGVAGKDGQPGPTGPRGEKGAGGDRGPPGDVGAPGIAGSAGLTGSPGVDGRDGDTGPPG
PAGAAGPRGERGDRGERGEQGPKGPTGETGPQGLPGSAGVNGQSGQQGPPGPPGPPGTPG
NPGSPGQAGTPGAPGSPGDQGEQGERGDSGEDGLPGQQGPPGESGDVGSQGETGPTGPDG
APGNPGSEGQRGETGPPGATGPQGPPGLDGASGDRGDTGSAGDKGSKGSKGNRGATGAPG
NDGTPGKEGGPGVRGEKGDPGPIGLSGVTGAAGTQGVRGDPGPPGSSGPQGPAGSAGDAG
AKGEPGAAGPTGAQGPKGGRGQKGDRGTPGQPGPNGAPGTSGDHGARGPPGDPGTTGAPG
NLGPIGPPGPPGAVGEPGSNGEDGLDGANGEPGPQGPKGPSGNRGDTGLPGPVGSPGDPG
PKGSSGDKGAMGPRGNRGNTGAQGPQGEKGDNGAPGLSGASGAAGANGNPGDDGEKGDSG
QTGPGGDRGPQGDVGPKGEQGLKGDRGVQGELGPPGEKGSKGQVGLPGPSGHKGEQGANG
APGADGGPGQAGSTGPPGPQGPQGDQGLTGQNGAKGEKGETVTVTITSPVGNEVPPESGL
KGTEYYIGQNSDKVFNEGVFTIYTELDSIKQTLRELLKPNGTRYNPARTCYDLFLCNPQF
MEGLYWIDPNLGSTDDAVQVYCSKPGCSCVECTDSSMSTIEERQTVEFECPIPYDQLGML
QLLSSSAQQKVRYHCDRQTHQNIEEMRLVGTDGEKWRLNNRNIKYETDGCQLGSLNEGSG
WFTKQYSSSMSLSGSPTWFPIASVVPDQRNSQYGVETGRACFCNRL
NT seq
4821 nt
NT seq
+upstream
nt +downstream
nt
atgaggtttctattcttactgtccgtcctcctagtgtctgcagtagcagctgaagattgt
cctattgaagttgatctaatcccgggtttacaatctcatactcaaatacagaatgtaaca
ggagtctgtatgagaagagctgctggggcaggagatatggcctacagtccacccagtggt
ggtgtcattattccaccttcagtctctcgtaactttacaagaaggtcctactgtatcttg
acgatccttcgtgaggccaatgggaactcaaatcccgttctacactttagcagtgggact
acaagggttggagacctttctgtcattaacggaactattagccacaccctcaggggggtt
acggcgaaattcagtggccagtataacacgagtaaatttcaatacatcacagtctgtgtt
aatgcagagacgagtgaagcactgttgtatatcgattgtgagagttcgccgcgagaaaga
gtaccttttattcaaagtgctggtggtgttcttgctgatggatttactgctattcaaagt
ggggttaatgccaacgacacttttcagggagcagttcaaatgttagcaatcattggttgt
gttgaacaaagagctcagtgtctggctgaaccaagtcaatgtaatctgccaaaaatcacc
ctagaaacagcactgggtatccttggtagccccacctccccaccctctgtcattggatca
ggggatagaccaactggacctgctgtcgttatcaagggggctaaaggacaaaaaggagca
cctggtgatatcgtatttgggccgcctggtttgcctggaccagctggtcctgagggagcc
cctggatcacgtggacctcctggtctgcctggtctacctggaaggaaaggacccagagga
gagcctggtttgactggtaacattggagggagaggaccacctggacctcctggacaacct
tacattgttaatattccacctggtactggtggatctggtcccgccccatcagcaccatca
gtaaaaggacccaataaatccccaggatcctgtctaactggagagccaggccctagagga
ccctcaggaccccagggacgccgcggaccacctggtaaccctggagctgatggaccccct
ggaccacctggtgaacgaggccctcaaggtactatcggaatacctggagcacctggagag
agaggaaggaatggagagcaaggtacttcaggtccccccgggcatcctgggccccctgga
ccccctggagataaaggacaacatggactaccaggacctacaggtttacaaggattgaag
ggacccactggtatggctggcccaccaggtaaccctggtaaccctggcagtgatggacca
cctggtcaaaatggtgacccaggaccaacaggactaccagggaatccgggtccacgagga
gttgtagggtctccaggagcactgggacctcctggaccacctggctcacctggtgaactg
ggggaacaaggaacaaaaggagctagaggatcagctggtgctagaggtttccctggaggt
agaggagcaccaggaagtcctggtagagatggtagtccaggagcacctggtcaagctggt
caggatggaaatagtggaaggaatggagagcaaggtccgcctggacctgaaggactaccc
ggtcacactggtcctgttggatcaactggtgctaaaggagcagctggacgtcctggtcct
ccaggtgctcctggtaatcctggagagaaaggagacaagggagatcaaggtcctagaggt
ccttatggtcataaaggagagaagggaaattctggtctacctggtaatcctggagcactg
ggagaatctggaagcttgggtcttcctggtccccctggtgataatggtagggatggtgac
aatgggcaaccaggagcacctggtcttcccggagcctcaggcccacctggtgaagcaggc
cctgatggtccacctggtcctcaaggagtccccggctggcccgggtctaaaggacagaaa
ggagtgagtggagcaccaggtcaaaggggaccacgtggtaacactggaagaagaggactg
atgggtattaacggtaaccctggaccatcaggagcacaaggacctcagggttctagagga
acacctggtccccctggaccacaggggaataaaggagacagaggaacacagggtcctcct
ggatcacccggagaacaaggttttgaaggagaagcaggtcaaagaggaccagcaggacaa
cctggagatgctggtgtacctggtcgtgatggagaacctggtcatagcggaccgtctggt
gatcatggtgtagctggtaaagatggacagccaggtcctactggacccagaggagagaag
ggggcaggaggtgatcgtggaccacctggtgatgtaggagcccctggaatagcaggatca
gctggtctaacaggcagtcctggagttgatggaagagatggagacactggcccaccagga
ccagctggagcagctggacccagaggagaaagaggagacagaggagagagaggagaacaa
ggtcctaaaggacccacaggagagacaggacctcaaggattaccaggcagtgctggagtc
aatggacaatcgggtcaacaaggtcctcctgggccacctggacctcctggtacacctgga
aatcctggatcaccaggtcaagctggtaccccaggggctcctgggtcaccaggggatcaa
ggggaacaaggagaaagaggagactctggagaagatggactacctggacaacaaggtcca
cctggtgaaagtggagatgttggatcacaaggagaaactggaccaactggtcctgatggt
gctcctggtaatcctggtagtgaaggtcaacgaggagaaacaggtccaccaggtgctact
ggtccacaaggtccacctggtcttgatggagcttcaggtgatagaggtgacacaggttct
gctggtgataaaggatccaaaggttccaaaggaaaccgtggtgctacaggtgcacctggt
aatgatggcacccccgggaaagagggagggcctggagtgagaggagagaaaggagaccct
ggacccatcggattatctggagttactggagcagctggtactcaaggagtaagaggagac
cctggaccgcctggttcttcaggcccacagggaccagctgggtcagcaggagatgctggt
gctaagggtgagcctggggccgctggaccaactggagctcaaggacccaaaggaggcaga
ggacagaaaggagatagaggaacacctggacaacctgggcctaatggagcacctggtact
agcggagatcatggagcaagaggaccacctggtgaccctggaaccactggagctcctggt
aatcttggtcccattggaccaccaggcccacctggagctgtgggtgagccaggcagtaat
ggtgaagatggtttagacggagcaaatggagagccaggtcctcaaggtcccaaaggccct
agtggcaatagaggagatacaggtctaccgggaccagttggtagtcccggtgatccagga
ccaaaaggatcatcaggagataaaggagctatgggaccaagagggaataggggtaacact
ggagcccaaggacctcagggagagaaaggagataatggagctccaggactctctggtgcc
tctggagcagctggagctaatggtaaccctggggatgatggtgagaagggggattctggt
caaactggacccggaggagatagaggtcctcaaggagacgtgggtcctaaaggagagcaa
gggttgaagggtgacagaggagtacaaggtgaattgggtccacctggtgagaaaggatcc
aagggacaagtgggactcccaggaccatctggacacaaaggagaacaaggagctaatggt
gcacctggtgctgacggaggtcctggacaagcaggaagtactggaccaccaggaccacaa
ggtcctcaaggtgatcaagggttaactggacaaaatggagctaaaggtgaaaaaggtgaa
actgtaacagtgacaataaccagtccagttggaaatgaggtcccaccagagagtggactg
aaagggacagagtattacattggtcaaaacagcgataaggttttcaacgagggagtcttc
acaatatacacggaactagactccatcaaacagacacttagagaacttttaaaaccaaac
gggacacgatacaacccagcaagaacctgctacgacttatttttatgcaaccctcagttc
atggaaggactctattggattgaccctaaccttggatccactgatgatgctgtacaggtc
tactgcagtaagccaggctgctcctgtgtggagtgtactgatagcagcatgtctaccatt
gaagaaagacagactgtggagtttgagtgtcctattccatatgatcagttgggtatgctg
cagttgttgagtagcagtgctcagcagaaggttcggtatcattgtgacagacaaacacat
caaaatatagaggagatgagactagtggggactgatggggagaaatggagactcaacaac
aggaacatcaaatatgagactgatgggtgccagctaggatctcttaatgagggttctggc
tggtttacaaagcagtacagtagcagcatgtccctcagtggtagccccacctggttccca
atagctagtgtagtccctgaccagaggaacagtcagtatggagtggaaacaggaagagct
tgtttctgcaatagactatag
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integrated database retrieval system
