Amphimedon queenslandica (sponge): 100640718
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Entry
100640718 CDS
T02284
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
aqu
Amphimedon queenslandica (sponge)
Pathway
aqu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aqu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100640718
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aqu03019
]
100640718
03041 Spliceosome [BR:
aqu03041
]
100640718
Messenger RNA biogenesis [BR:
aqu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
100640718
Spliceosome [BR:
aqu03041
]
Complex B
Other components
Prp19-related factors
100640718
Complex C
100640718
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
TPR_14
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_12
TPR_15
TPR_2
ARM_TT21_C
ARM_TT21
TPR_16
ATG1-like_MIT2
Motif
Other DBs
NCBI-GeneID:
100640718
NCBI-ProteinID:
XP_019856051
UniProt:
A0AAN0JGX5
LinkDB
All DBs
Position
Unknown
AA seq
551 aa
AA seq
DB search
MIQSKMESTTELTEEDEVELELRLSRFENLMDTRPVLLSSVLLRQNPHNVHEWHKRVALF
EGRPSDIIKTFTEAVQTVNIEQAVGKPHTLWTAFAMFYETNNQLPEARIIFDKATKVQFK
SVDDLANVWCEYAEMELRHENYDRALQLMQRATAVPPKRAAYYDKSEPVQNRLYKNLKVW
SMYADLEESLGTLETTKAVYNRIIDLKIATPQTILNFCSFLEENNYFEESFKAYERGISL
FRWPHVNELWKDYLTKFINRYGGKKLERARDLFEQALDGCPTEYAKNLYLLYAKLEEDYG
LTRRAMNVYERATAAVLPEEQHEMFSIYIKRASESFGIVQTRSIHEKAIEVLPEGPAREM
CLSYAQLETKLGEIDRARAIYSHGSQFSDPRTAKKYWKEWQEFEVRHGNEDTFREMLRIK
RSVQAQYNTQVNFMMSSQMMANTAKQAMTGGQDDMKLLEEKARAMNEETKKDKAKTKTMS
FVKSTEATAEMEELARNANPDEINIAEDDDEDIQPVEEIQLEKQTVPSAVFGGISDENLG
ARERLAAKRKR
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atgatacaatcaaagatggagtcaaccacagaactcactgaggaagatgaggttgagttg
gaactaagactctcacgttttgagaacctaatggacacgaggccagtactcctcagtagc
gtcctcctccgtcagaatcctcacaacgtccacgagtggcacaagagggtggcactgttt
gaaggaagaccctctgacattattaaaacattcactgaggcagttcagactgtcaatata
gagcaagcagtggggaaaccacacacactctggactgcctttgctatgttctatgaaact
aataatcagctaccagaggctcgtattatatttgataaagctactaaggttcagtttaaa
tcagttgatgatttagctaatgtttggtgtgagtatgctgaaatggagctcaggcacgaa
aattatgacagagcactacagctgatgcagagagcaactgcagtccctcctaaaagagct
gcctactatgacaagagtgagccggttcagaatagattatataagaatctaaaggtttgg
tcaatgtatgctgaccttgaggagagcctgggaacacttgaaaccactaaggcagtatac
aacaggattattgatctaaagattgccactccacagactatactcaatttctgctccttc
ctagaggagaacaattattttgaggaaagtttcaaggcttacgagagagggatatcgcta
ttccgctggccacacgttaacgaactgtggaaggattacctcacgaaattcataaataga
tatggagggaagaagttagagagagcaagagatttgtttgagcaagcacttgatggctgt
ccaactgaatatgctaaaaatttgtatctgctttatgctaaactggaggaagactacgga
ctaacaagacgtgccatgaatgtgtatgagagagccacagcagcagtactgcctgaggaa
caacatgagatgttttctatttatattaaacgtgcctcagagtcctttggtatagtacag
accagatcaatacatgagaaggcaattgaagtattaccagaaggacccgctagggagatg
tgtttaagttatgctcaattggagactaaacttggtgagatagatagagcaagagctatt
tatagtcatggatctcagttcagtgatccacggactgctaagaagtactggaaggagtgg
caggagtttgaggtacgtcatggaaatgaggacacatttagagaaatgctaagaataaag
agaagtgttcaagcacaatataacacacaggttaattttatgatgtcttcccaaatgatg
gccaatactgcaaaacaagccatgactggaggacaggacgacatgaaactgttggaagag
aaggcgagagcaatgaatgaagaaaccaaaaaggacaaagcgaaaacaaaaacaatgagt
tttgtaaagagtacagaggcaactgctgaaatggaggaattggcaagaaatgctaatccg
gatgaaattaatatcgccgaagacgacgatgaagatattcaaccagtagaagaaattcaa
ttggagaaacaaaccgtcccaagtgctgtttttggaggaatatccgatgagaatttggga
gctagagaaaggctggcggccaaaagaaagcgatga
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