Amphimedon queenslandica (sponge): 100640873
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Entry
100640873 CDS
T02284
Name
(RefSeq) probable ATP-dependent RNA helicase DDX6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
aqu
Amphimedon queenslandica (sponge)
Pathway
aqu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aqu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100640873
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aqu03019
]
100640873
03036 Chromosome and associated proteins [BR:
aqu03036
]
100640873
Enzymes [BR:
aqu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100640873
Messenger RNA biogenesis [BR:
aqu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
100640873
mRNA degradation factors
5'-3' decay
Decapping complex
100640873
Chromosome and associated proteins [BR:
aqu03036
]
Eukaryotic type
Gene silencing
piRNA pathway
100640873
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA
Motif
Other DBs
NCBI-GeneID:
100640873
NCBI-ProteinID:
XP_003386052
UniProt:
A0A1X7V1T3
LinkDB
All DBs
Position
Unknown
AA seq
444 aa
AA seq
DB search
MAAPAAISSATSHSATENGDWKGKLAIPPKDKRKQTEDVARRKGNEFEDYCLKRDLLMGI
FEKGYEAPSPIQEESIPIALAGRDILARAKNGTGKTGAYLIPLLEKIDTDKTHIQSLVIV
PTRELALQTSQLCIELGKHMNARVMVTTGGTSLRDDIMRLDETVHIIVATPGRILDLIEK
GVAKMGACQILVLDEADKLLSMDYQKTLDRIISRLPSGRQVFLFSATFPISIQGFMDTHM
RNPYKINLMDELTLKGVTQYYAYLEERQKVHCLNTLFSKLQINQSIIFCNSVQRVELLAK
KITQLGYSCFFMHSKMAQHHRNRVFHDFRNGECRNLVCTDLLTRGIDIQAVNVVINFDFP
KTSETYLHRIGRSGRFGHLGLAINLITHDDRFNLFSTEQQLKTEIKPVPKEIDKRLYVAE
YQVLNEAPPQTSSSKSEGAKPLKT
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atggccgctcctgcagcaatctctagcgccacttcccattctgctactgaaaatggagac
tggaaaggcaaactagccatacctcctaaggacaaaagaaaacaaacagaagatgtcgct
cgtagaaaaggcaacgaatttgaagactactgccttaagagagaccttctcatgggtatc
tttgaaaaaggctacgaagctccttctccgattcaagaggagagcatacccatagctctc
gctgggagggacatacttgcccgagcaaagaacgggacgggtaaaaccggagcatatctc
atcccactcctggagaagatcgacaccgataagacacacatacaatcattggtaattgtc
ccgacacgagagctagcattacagacgtcacagctctgcattgagctagggaagcacatg
aacgctcgtgtgatggtgacaacaggaggtacgagtctaagagacgatattatgagactc
gatgaaaccgttcacatcatcgtcgcaacccccgggagaatattggacctcattgaaaag
ggtgtggctaagatgggtgcgtgccaaatactcgttctagatgaggctgataagttgtta
tcaatggattaccagaagacactggacaggatcatatcaaggctaccctcaggacgacaa
gtctttctcttctctgcgacattccctatctccattcaaggttttatggacactcacatg
cgtaatccgtacaagattaacctgatggatgagctaaccctgaaaggtgtcacccaatat
tacgcatacttggaggaaagacagaaagtccattgtcttaacacactcttctcaaaatta
caaattaatcagagtataatattctgcaattcagttcaacgcgttgagctattggccaag
aagatcacccagctcggctactcttgcttcttcatgcatagtaagatggcacagcatcac
aggaacagggtcttccatgacttcaggaatggagagtgtcgtaatctagtctgtactgat
ctccttacaagaggcatcgacattcaagcagtcaatgttgtcatcaatttcgacttccca
aagacctccgaaacctatctccatcgcatcgggcgctccggaagattcgggcaccttgga
ctcgccattaatctcatcacgcatgacgaccgattcaatctcttttccaccgaacagcaa
ctcaagacggaaataaaaccagtcccaaaggaaatcgataagagactctacgtggctgag
tatcaggtactcaacgaggctcctccccagactagctcttcaaagtcagagggagcgaag
ccgttaaaaacttaa
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