Amphimedon queenslandica (sponge): 105312415
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Entry
105312415 CDS
T02284
Name
(RefSeq) general transcription factor IIH subunit 1-like isoform X2
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
aqu
Amphimedon queenslandica (sponge)
Pathway
aqu03022
Basal transcription factors
aqu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aqu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
105312415
09124 Replication and repair
03420 Nucleotide excision repair
105312415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aqu03021
]
105312415
03400 DNA repair and recombination proteins [BR:
aqu03400
]
105312415
Transcription machinery [BR:
aqu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
105312415
DNA repair and recombination proteins [BR:
aqu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
105312415
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PH_TFIIH
BSD
Vps36_ESCRT-II
ApoB100_C
Motif
Other DBs
NCBI-GeneID:
105312415
NCBI-ProteinID:
XP_011403343
UniProt:
A0A1X7V2V1
LinkDB
All DBs
Position
Unknown
AA seq
482 aa
AA seq
DB search
MSGEETLLVVNNVRHKKQDGSIVMTKTRFAWFREGYSSEMTVNLPYLSIKSHKISKEGSS
SVQMQLVLSDSSTYNFHYTGSDPKKARSRVSEQLVQCISKANAVQVNNPELEAKWRLLQD
ADLYTLYKDMVVSGIITAEEFWANHQKSNYDQQQRSGLPSAFLVDIEAVSGCNTVQYQLS
TDIIENIFRTYPTVKEKHSQLVPDKLTEEQFWVQFFQSHKFHRNRLPQSSSGGQSSSSMF
HECIEQDITAIKDKPKTDDGLLIHESDAPLEDVILEDSVLKVDKELLQRCNQHSALVLNA
IRSDEAAGNASQTPENRNGSSLQLAIGPAHMIADTPPTDLVSLASHYLYTASQESQQTPV
LLPSQAQSASKHLMVGGSLVNMDSSAAVSSISPSSFESLCRYQRSLGELLRHFWACFPVV
NQQLEQKVHRMAQCIQDFRDKQLLNEFKLQLTSDSEEKLLGQLLLLIDAAMDRYHDWMSK
QR
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgagtggtgaagaaactcttttagttgtgaataatgtgagacacaagaagcaggacggg
agcattgttatgacaaagactaggtttgcgtggttccgtgaaggctacagctctgaaatg
acagtgaaccttccctacttatcaattaagagtcacaagattagcaaagagggtagctct
agcgtgcagatgcagctggtgctgagtgattctagcacttataatttccattacactggg
agtgacccaaagaaggccagaagtcgagtctctgaacaacttgtacagtgtatcagcaaa
gcaaatgcagtacaggtcaataatcccgagctagaagctaaatggaggctattgcaagat
gccgatttatatacactctataaagacatggttgtctctggcatcataacagctgaagaa
ttttgggctaatcaccaaaaatcaaattatgatcagcagcagcgatcaggcttaccttca
gcattcctagtagatatagaggctgtgtctggttgcaatactgtccagtatcaactttca
actgatatcattgagaatatatttagaacttatcccactgtaaaagagaagcactcgcaa
ttagtacctgataaattaactgaagagcaattctgggtccagttttttcaatctcataaa
tttcaccggaaccgtttgccccagtcatcgtcaggggggcagtcgtcttcaagcatgttt
catgaatgcatagaacaagatataacagcaattaaagataagccaaagactgatgatggt
ttactgatacatgagagtgatgctccacttgaagatgttattttagaagactctgtccta
aaagttgataaggagctactccaacgttgcaatcaacacagtgcactagtacttaatgct
atccgatcggatgaggcagcaggtaatgcaagccaaactcctgaaaataggaatggaagc
tcgctccagttagctatcggccctgcccacatgatagcagacacgcccccaacagatctc
gtatcccttgcatctcattacctctacacagcatcacaagaatcccaacaaactccagtt
ctcttaccttcacaagcacagtccgccagtaaacatttaatggttggtggatcattagtt
aatatggactcctcagcagctgtctcttctatcagtccttcatcgtttgaatcactctgt
cgatatcagcgttcactgggagagctactgagacacttctgggcttgtttccctgttgtt
aatcagcagctggagcaaaaggtccatagaatggctcaatgtatacaggattttagagac
aagcaactcttaaatgagttcaagttgcaactgacttcagactcagaggaaaaactactt
gggcagttgcttctgttaattgatgcagcaatggacagatatcatgactggatgagcaaa
cagagataa
DBGET
integrated database retrieval system
