Aquihabitans sp. G128: KSP35_06340
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Entry
KSP35_06340 CDS
T07304
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
aqz
Aquihabitans sp. G128
Pathway
aqz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aqz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KSP35_06340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aqz03019
]
KSP35_06340
Messenger RNA biogenesis [BR:
aqz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KSP35_06340
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
QXC62416
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Position
complement(1346119..1347780)
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AA seq
553 aa
AA seq
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MPNPVSVTFLGGLGEIGRNCAAIEIDGKIMLLDCGLMFPEADMLGVDLVLPDFSWLIERG
DDIVGCIVTHGHEDHHGALAFLLRELSFPIIGSALTLGFASNRIDEAGLMKKTKLLVVKD
NERRKFGPFDCEFIPVTHSVPHGFATAFHTPQGTILHTGDWKLDLTPVDGRLTDLGVMGA
IAQNEGVRLLLSDSTNADQAGHSRSERSVGKVLTDLFAANEGRRIITACFASHVHRVQQI
ADAAIAQGRVVATLGLSMKKNVRLAKDMGLLKIPDNKLLDIEDVKDMEPGKVCVISTGSQ
GEPMSALALMASSESRWLKLTDQDTVILSSHPIPGNEMNVTKVIDGLVRLGVRVVHSGLH
DVHATGHAKSEELKTLLSIVRPEYFVPVHGEYRHMVAHAELGRIMGVKDQNILVCEDGDR
VKLTDKGLKRDGKVPASYTYVDGIVGDVGHGVLRDRQVLAEEGVVVVIVTVDHEDGAIVN
GPEVITKGWVYAPEAEELIDECRQHIAKLVQNALDKGDDDVESLQRVVRKAAGKFVSDRT
KRRPMIVPVVMSL
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaccctgtttcggtcaccttcctcggtggcctcggtgagatcgggcgcaactgc
gctgcgatcgagatcgacggcaagatcatgctcctcgactgcgggctgatgttcccggag
gccgacatgctcggcgtcgacctcgtgctgccggacttctcctggctgatcgagcggggc
gacgacatcgtcggctgcatcgtcacccacggccacgaggaccaccacggcgccctcgcc
ttcctgctccgcgagctgtcgttcccgatcatcggctcggcgctcaccctcggcttcgcc
tccaaccggatcgacgaggccggcctcatgaagaagaccaagctgctggtggtcaaggac
aacgagcgccggaagttcggcccgttcgactgcgagttcatcccggtcacgcactcggtg
ccccacggcttcgccaccgccttccacacgccgcagggcacgatcctgcacaccggcgac
tggaagctcgacctcaccccggtcgacggccgcctcaccgacctcggcgtcatgggcgcc
atcgcccagaacgagggcgtgcgcctcctgctctccgacagcaccaacgccgaccaagcg
ggccactcccgctcggagaggtcggtgggcaaggtcctcaccgacctcttcgccgccaac
gagggccggcgcatcatcaccgcctgcttcgccagccacgtgcaccgcgtgcagcagatc
gccgacgccgccatcgcccagggccgcgtggtcgccacgctcggcctgtcgatgaagaag
aacgtgcgcctggccaaggacatgggcctgctcaagatccccgacaacaagctcctcgac
atcgaggacgtcaaggacatggagccgggcaaggtctgcgtcatctccaccggcagccag
ggcgagcccatgtcggcgctggcgctcatggcctccagcgagagccgctggctcaagctc
accgaccaggacaccgtgatcctgtcgtcgcaccccatccccggcaacgagatgaacgtc
accaaggtcatcgacggcctggtgcgcctcggcgtgcgggtggtgcactccggcctgcac
gacgtgcacgccaccggccacgccaagtccgaggagctcaagacgctgctctcgatcgtg
cggccggagtacttcgtgccggtccacggcgagtaccgccacatggtcgcccacgccgag
ctgggccggatcatgggcgtgaaggaccagaacatcctcgtgtgcgaggacggcgaccgc
gtgaagctcaccgacaagggcctcaagcgagacggcaaggtcccggccagctacacctac
gtcgacggcatcgtgggcgacgtcggccacggcgtgctgcgcgaccgccaggtgctggcc
gaggagggcgtggtggtggtcatcgtcaccgtcgaccacgaggacggcgccatcgtcaac
ggccccgaggtcatcaccaagggctgggtctacgccccggaggccgaggagctcatcgac
gagtgccgccagcacatcgccaagctggtccagaacgcgctcgacaagggcgacgacgac
gtcgagtcgctccagcgggtggtccgcaaggccgccggcaagttcgtgagcgaccgcacc
aagcggcgcccgatgatcgtcccggtggtcatgtcgctctag
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