Aquihabitans sp. G128: KSP35_18185
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Entry
KSP35_18185 CDS
T07304
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
aqz
Aquihabitans sp. G128
Pathway
aqz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aqz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KSP35_18185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aqz03021
]
KSP35_18185
03400 DNA repair and recombination proteins [BR:
aqz03400
]
KSP35_18185
Enzymes [BR:
aqz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KSP35_18185
Transcription machinery [BR:
aqz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KSP35_18185
DNA repair and recombination proteins [BR:
aqz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KSP35_18185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
QXC60252
UniProt:
A0A8F4J4X6
LinkDB
All DBs
Position
3785528..3789445
Genome browser
AA seq
1305 aa
AA seq
DB search
MLDVNNFDQLRIGLATADSIRMWSNGEVKKPETINYRTLKPEKDGLFCEKIFGPTKDWEC
YCGKYKRVRFKGIICERCGVEVTRSKVRRERMGHIELAAPTVHIWYLRGTRSWLAYLLMG
TEPREELKAKQLEKVIYFAANLVVSVDEEKRDQDLPNLEAEVLAEREVIEKDRELELARR
MEELEAEITQLEADGAKDSELKARQKQADKDLAAIRERYELELDVLTRAFDEFKGMFSRQ
IIEDEMLWRELEDRYGEYFEGGMGADAIKSLINELDLDVEEVKLRAAIDPQEGQRPLSAQ
RKQKAIKRLKIVASFNQRDENGKRINDPRAMILDVVPVIPPELRPMVQLDGGRFATSDLN
DLYRRVINRNNRLKRLLDLGAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKS
LSDMLKGKQGRFRQNLLGKRADYSGRSVIVVGPTLKLHQCGLPKLMALELFKPFVMKKLV
DAELAQNIKSAKRMVERRRPQVWDVLEEAIKEHPVMLNRAPTLHRLGIQAFEPVLVEGKA
IQIHPLVCTAFNADFDGDQMAVHLPLSSEAQAEARVLMLSANNVLSPAHGRPLVTPTQDM
IIGAFYLTELVPGAKGEGRVFRHLFEVERAYENKDLALHAKIQFRGDGRDGRDKTIETTA
GRIFFNRTLPDSFEFINERIDKKLMGAITDRLANDEAKQIVSTSLDAIKNLCFRYASQSG
ITISIDDVKTPVEKAGIMEDHELQAQKVEDQFRRGIITDGERRQKEVEIWTDATDMVRTA
MEKSLKAEQFNPIEMMVGSGARGNMMQVRQIAGMRGLVANPRGDMIPRPIKSNFREGLEM
LEYFIATPGARKGLVDTALRTADSGYLTRRLVDVAQELIINSEDPFEKAAATGSPIRGIW
IEDVGPDTAAKRTYIETTLYSRTIANDVTCSDGTVFPRGTVVDQDIMEKLRDDPEVTRVR
VLSPLTDDSVAGISGASYGMSLATGKAIEVGEAVGVIAAQSIGEPGTQLTMRTFHTGGIA
GSDIAGGLPRVVELFEARSPKGKATLARTTGVVRIGEDEGKGRVITIVGDDGTEDTYTVP
AMARLEVEDGGEVEAGDALVEGPRDPKELLEIRGVRETQTYLVEQVQKVYREQGVSIHNK
HIELIVRQMTRRVTVLEANDSDFLPGERVDQKAFADTNKLLVEEGKRPAEGRVELMGITK
ASLATDSWLSAASFQETTRVLTEAAIDSRSDSLVGLKENIIIGKLIPAGTGMHDYRDIET
NAPDYQPMAFYSSDGEQLDDAEWLASVGSGSGGDVVDLPTATPAD
NT seq
3918 nt
NT seq
+upstream
nt +downstream
nt
atgctcgacgtcaacaacttcgaccagctccggatcggcctggccaccgcggactccatc
cgcatgtggtccaacggcgaggtcaagaagccggagaccatcaactaccgcacgctcaag
ccggagaaggacgggctcttctgcgagaagatcttcggtccgaccaaggactgggagtgc
tactgcggcaagtacaagcgggtgcgcttcaagggcatcatctgcgagcgctgcggcgtg
gaggtcacccgctccaaggtccggcgcgagcgcatgggccacatcgagctggcggccccc
accgtccacatctggtacctccgcggcacccgttcgtggctggcctacctgctcatgggc
accgagccccgtgaggagctgaaggccaagcagctggagaaggtcatctacttcgccgcc
aacctcgtcgtgtccgtcgacgaggagaagcgcgaccaggacctgccgaacctcgaggcc
gaggtgctcgccgagcgcgaggtcatcgagaaggaccgcgagctcgagctggcccggcgc
atggaggagctcgaagccgagatcacccagctcgaggccgacggcgccaaggactccgag
ctgaaggcccgccagaagcaggccgacaaggacctggcggccatccgcgagcgctacgag
ctggagctcgacgtgctcacccgggccttcgacgagttcaagggcatgttctcccgccag
atcatcgaggacgagatgctctggcgcgagctcgaggaccgctacggcgagtacttcgag
ggcggcatgggcgcggatgccatcaagtcgctcatcaacgagctcgacctcgacgtcgaa
gaggtcaagctccgcgccgcgatcgacccgcaggagggccagcgccccctgtcggcccag
cgcaagcagaaggccatcaagcgcctgaagatcgtcgcctcgttcaaccagcgcgacgag
aacggcaagcggatcaacgacccccgggccatgatcctcgacgtcgtcccggtgatcccg
ccggagctgcgcccgatggtccagctcgacggtggccgcttcgccacctcggacctcaac
gacctgtaccgccgggtcatcaaccggaacaaccgcctgaagcgcctgctcgacctcggg
gcccccgagatcatcgtgaacaacgagaagcgcatgctccaggaggccgtcgacgccctg
ttcgacaacggccgccgtggccgtccggtgaccgggccgggcaaccgcccgctcaagtcg
ctgtccgacatgctcaagggcaagcagggccggttccgccagaacctgctcggcaagcgc
gccgactactccggccgttcggtcatcgtcgtcggccccacgctcaagctgcaccagtgc
ggcctgcccaagctgatggcgctggagctcttcaagcccttcgtcatgaagaagctggtc
gacgccgagctggcccagaacatcaagtcggccaagcgcatggtcgagcgtcgtcgcccg
caggtctgggacgtgctcgaggaggccatcaaggagcacccggtcatgctgaaccgggcc
cccacgctgcaccgcctcggcatccaggccttcgagcccgtgctggtcgagggcaaggcc
atccagatccacccgctggtgtgcaccgccttcaacgccgacttcgacggcgaccagatg
gccgtccacctgccgctgtcgtcggaggcgcaggccgaggcccgcgtgctgatgctctcg
gccaacaacgtgctgtcgcccgcccacggtcgcccgctggtcacgcccacccaggacatg
atcatcggcgccttctacctcaccgagctcgtgcccggtgccaagggcgagggccgcgtc
ttccgccacctcttcgaggtggagcgggcgtacgagaacaaggacctggcgctgcacgcc
aagatccagttccgtggcgacggccgcgacggtcgggacaagaccatcgagaccaccgcc
gggcgcatcttcttcaaccgcacgctgccggactccttcgagttcatcaacgagcgcatc
gacaagaagctgatgggcgccatcaccgaccgcctggccaacgacgaggcgaagcagatc
gtgtcgaccagcctcgacgccatcaagaacctctgcttccgctacgcgtcgcagtccggc
atcaccatctcgatcgacgacgtgaagacgccggtcgagaaggccgggatcatggaggac
cacgagctccaggcccagaaggtcgaggaccagttccgtcggggcatcatcaccgacggc
gagcggcgccagaaggaggtggagatctggaccgacgccaccgacatggtgcggacggcc
atggagaagagcctcaaggccgagcagttcaaccccatcgagatgatggtgggctccggc
gcccgagggaacatgatgcaggtgcgtcagatcgccgggatgcgtggcctcgtggccaac
ccccgtggcgacatgatcccccgccccatcaagtccaacttccgtgaggggttggagatg
ctggagtacttcatcgccacgcctggcgctcggaagggcctggtcgacaccgccctgcgg
accgccgactccggctacctgacccgtcgcctcgtcgacgtggcccaggagctgatcatc
aacagcgaagaccccttcgagaaggccgccgccacgggctcgcccatccgcggcatctgg
atcgaggacgtgggccccgacaccgccgccaagcggacctacatcgagaccacgctctac
agccggaccatcgccaacgacgtgacctgcagcgacggcaccgtgttcccccggggcacc
gtcgtcgaccaggacatcatggagaagctccgtgacgaccccgaggtcacccgcgtgcgg
gtgctctcgccgctgaccgacgactccgtggccggcatctccggtgccagctacggcatg
tcgctggccaccggcaaggccatcgaggtcggcgaggcggtcggcgtgatcgccgcccag
tcgatcggcgagcccggcacgcagctgaccatgcggaccttccacaccggcggcatcgcc
ggctccgacatcgccggcggcctcccccgcgtggtcgagctcttcgaagctcgctcgccc
aagggcaaggccaccctggcccgcaccaccggtgtggtccggatcggcgaggacgagggc
aagggccgcgtcatcaccatcgtcggcgacgacggcaccgaggacacctacacggtgccc
gccatggcccgcctcgaggtcgaggacggtggcgaggtggaagccggcgacgccctggtc
gaaggtccccgtgaccccaaggagctcctcgagatccgtggcgtccgcgagacccagacc
tacctggtggagcaggtccagaaggtgtaccgcgagcagggtgtgtcgatccacaacaag
cacatcgagctcatcgtgcgccagatgacccgccgggtcaccgtgctcgaggccaacgac
tccgacttcctcccgggggagcgggtcgaccagaaggccttcgccgacaccaacaagctg
ttggtcgaggagggcaagcgcccggccgagggtcgggtggagctcatgggcatcaccaag
gcctcgctggccaccgactcgtggctgtccgcggcctccttccaggagaccacccgggtg
ctcaccgaagcggcgatcgactcccggtccgactccctcgtcgggctcaaggagaacatc
atcatcggcaagctcatcccggccggcaccggcatgcacgactaccgggacatcgagacc
aacgccccggactaccagccgatggccttctactcctccgacggcgagcagctcgacgat
gccgagtggctggccagcgtggggtcgggcagcggcggcgacgtcgtcgacctgcccacg
gccaccccggccgactga
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