Aquihabitans sp. G128: KSP35_22320
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Entry
KSP35_22320 CDS
T07304
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aqz
Aquihabitans sp. G128
Pathway
aqz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aqz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KSP35_22320 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aqz03400
]
KSP35_22320 (mfd)
Enzymes [BR:
aqz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KSP35_22320 (mfd)
DNA repair and recombination proteins [BR:
aqz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KSP35_22320 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QXC61013
UniProt:
A0A8F4FWS0
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All DBs
Position
4637255..4640644
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AA seq
1129 aa
AA seq
DB search
MALTDLPLLLRDEPALLQVLGRQAAVLAVPEPARPITIAGLATVGSRRPILVATPTTADA
ERLAHDLATFLGPDDVELFPAWETLPFERVSPGTETMGRRMRTIWRLGQAGRRPAVVVAP
VRALVQRLGPHVDHTEPLVVRTGEQRDQAALTEWLGMAGYRRESQVEHRGEFAVRGSIVD
VFGATADGPIRIDLWGDEVDRLTAFSVSDQRSTDDLDQVEVFPARELLPTDEVRARAEGL
MASEPWGREQWERLSEGQIFDGMESWLPWLTDDQRTIVDLLPDEGLVLVVEPRRLRDRAE
DILAEEADLAASLARTWEVGPDRTFPRLHSEFGELFAATSVPVWTVTVTPDGPDVATVAA
TGWNPVVGDGEGLVRQLRDLLDQGYRVVVAAEGEGSALRLGDVLRDQGLELPVEVGSLDR
GCVLTGAKLAILAESDFTGRRRAHRAPRPRKRDTAGFFDGLTVGDYVVHHQHGVGRFQGM
VKRAIGGVERDYLLLDYRGADKLYVPSDQIDAVRHYSGGDSPSLSKLGGGDWNKSKARVK
AEVDAVAQELVVLYQTRLHSEGHAFPQDTPWQRELEESFPFRETPDQLKAIEEVKADMEA
ETPMDRLVCGDVGFGKTEVALRAAFKAVQDGKQVAVLVPTTLLATQHFQTFSDRFAPFPV
RVEVMSRFLTPSQSRQVAADVTSGDVDVVIGTHRLLSQDIQFKDLGLLIVDEEQRFGVSH
KEQIKQFTTNVDVLTLSATPIPRTLELSLTGIRDLTLLNTPPAERQPILTYVGEYDDRAV
AESIRRELLREGQVFFVHNRVKDIELTAAKLRELVPEARVAVAHGQMDEGTLEKVVLDFW
EGQFDVLVCTTIIESGIDMPTVNTLVVDRADRLGLGQLHQLRGRVGRSGQRAYAYLFHPQ
DMRLSEEAYERLKTIGEATELGSGFRIAMRDLEIRGAGSLLGTGQSGHIAAVGYDLYVQM
VHEAVQELKGEPVRPPAEVKLDLPLDANLSADYVPKEELRLEAYRRLAEVRTDQEVDDIR
AEWEDRFGPVPEAAARLLDVARLRVEAHRIGAREINVTKGPAFGGPAWTCRVSPLHLKTS
QTIRLERLFKGAVYKEEQGQVIFPIPKTPDLAGTIVDLLRQLVPPTTEA
NT seq
3390 nt
NT seq
+upstream
nt +downstream
nt
atggccctcaccgacctcccgctgctcctccgtgacgagccggccctcctgcaggtgctg
ggtcgccaggccgcggtgctggccgtgccggagccggcgcgcccgatcaccatcgccggg
ctggccacggtggggtcccgccgcccgatcctggtggccacgcccacgacggccgacgcc
gagcggctggcccacgacctggccacgttcctcggcccggatgacgtcgagctgttcccg
gcctgggagacgctgccgttcgagcgggtgagccccggcaccgagaccatgggccgccgc
atgcgcaccatctggcggctcggccaggccggccgtcgccccgccgtggtggtggcgccg
gtgcgggcgctggtgcagcgcctcggcccccacgtcgaccacaccgaaccgctcgtggtg
aggacgggcgagcagcgggaccaggcggcgctcaccgagtggctgggcatggccggctac
cggcgcgagagccaggtggagcaccggggcgagttcgcggtccgtggctcgatcgtcgac
gtgttcggcgccaccgccgacggtcccatccgcatcgacctgtggggcgacgaggtcgac
cgcctcaccgccttctcggtcagcgaccagcgctccaccgacgacctggaccaggtggag
gtgttccccgcccgggagctgctgcccaccgacgaggtgcgggcccgagccgaggggctc
atggccagcgagccgtggggccgcgagcagtgggagcgcctgtcggaggggcagatcttc
gacggcatggagagctggctgccctggctcaccgacgaccagcgcaccatcgtcgacctg
ctgcccgacgaggggttggtgctggtggtggagccgcgccgcctgcgggaccgggccgag
gacatcctggccgaggaggcggacctggccgcctcgctggcgcgcacgtgggaggtcggt
cccgaccgcaccttcccccgcctgcacagcgagttcggcgagctgttcgccgccacctcg
gtgccggtgtggaccgttaccgtcacgcccgacgggcccgacgtcgccaccgtggcggcc
accgggtggaaccccgtcgtcggcgacggcgaggggctggtccgccagctgcgcgacctg
ctcgaccagggctatcgggtcgtggtcgccgccgagggcgagggctcggccctgcgcctc
ggcgacgtgctccgcgaccagggcctggagctgccggtcgaggtcggctcgctcgaccgc
ggctgcgtgctcaccggcgccaagctggcgatcctcgccgagtccgacttcaccggccgg
cgccgggcccaccgggcgccccggccccgcaagcgcgacaccgccggcttcttcgacggg
ctcaccgtcggcgactacgtggtccaccaccagcacggcgtcggccgcttccagggcatg
gtcaagcgggccatcggcggggtggagcgggactacctgctgctcgactaccgcggtgcc
gacaagctctacgtccccagcgaccagatcgacgccgtccgccactacagcggcggcgac
tcgcccagcctctcgaagctgggcggcggcgactggaacaagagcaaggcccgggtcaag
gccgaggtcgacgcggtggcccaggagctggtggtgctctaccagacccgcctgcacagc
gagggacacgccttcccgcaggacaccccgtggcagcgcgagctggaggagagcttcccg
ttccgggagacgcccgaccagctcaaggccatcgaagaggtcaaggccgacatggaggcc
gagacccccatggaccgcctggtctgcggcgacgtcggcttcggcaagaccgaggtcgcc
ctgcgcgccgcgttcaaggcggtgcaggacggcaagcaggtggccgtgctggtgcccacc
acgctgctcgccacccagcacttccagaccttcagcgatcgcttcgccccgttccccgtg
cgggtcgaggtcatgagccggttcctcacgccgtcgcagtcccggcaggtggccgccgac
gtcacctcgggcgacgtcgacgtggtcatcggcacccaccgcctgctgtcgcaggacatc
cagttcaaggacctcggcctgctgatcgtcgacgaggagcagcgcttcggggtgagccac
aaggagcagatcaagcagttcaccaccaacgtcgacgtgctgacgctctcggccacgccg
atcccgcggaccctggagctgagcctcacgggcatccgcgacctcaccctgctcaacacg
ccgccggccgagcgccagccgatcctcacctacgtcggcgagtacgacgaccgcgccgtg
gccgagagcatccgtcgggagctgctgcgcgagggccaggtgttcttcgtgcacaaccgg
gtcaaggacatcgagctcaccgcggccaagctgcgcgagctggtccccgaggcccgggtg
gcggtggcccacggccagatggacgagggcacgctcgagaaggtggtcctcgacttctgg
gagggccagttcgacgtgctggtgtgcaccaccatcatcgagagcggcatcgacatgccc
acggtgaacaccctcgtggtcgaccgggccgaccgcctgggcctgggccagctccaccag
ctgcggggccgggtgggccggtcgggccagcgggcctacgcgtacctcttccacccgcag
gacatgcggctcagcgaggaggcctacgagcggctgaagaccatcggcgaggccaccgag
ctgggttcgggcttccgcatcgccatgcgcgacctcgagatccgcggcgccggctcgctg
ctgggcaccggccagagcggccacatcgcggcggtgggctacgacctctacgtccagatg
gtccacgaggcggtgcaggagctcaagggcgagccggtccgcccgccggccgaggtcaag
ctggacctgccgctcgacgccaacctgtcggccgactacgtgcccaaggaggagctgcgc
ctggaggcgtaccgccgcctggccgaggtgcgcaccgaccaggaggtcgacgacatccgg
gccgagtgggaggaccgcttcggccccgtgcccgaggccgccgcgaggctgctcgacgtg
gcgaggctgcgcgtcgaggcccaccgcatcggcgcccgcgagatcaacgtcaccaagggc
cccgccttcggcggaccggcctggacgtgccgggtctccccgctgcacctcaagaccagc
cagaccatccgcctcgagcggctgttcaagggcgcggtctacaaggaggagcagggccag
gtgatcttcccgatccccaagacccccgacctcgccggcaccatcgtcgacctcctccgc
cagctcgtcccccccaccaccgaggcctga
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