Rhizobium rhizogenes K84: Arad_0034
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Entry
Arad_0034 CDS
T00850
Symbol
addA
Name
(GenBank) double-strand break repair helicase AddA
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
ara
Rhizobium rhizogenes K84
Brite
KEGG Orthology (KO) [BR:
ara00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ara03400
]
Arad_0034 (addA)
Enzymes [BR:
ara01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Arad_0034 (addA)
DNA repair and recombination proteins [BR:
ara03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
Arad_0034 (addA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PDDEXK_1
AAA_19
UvrD_C_2
AAA_30
NPHP3_N
DEAD
Motif
Other DBs
NCBI-ProteinID:
ACM24831
UniProt:
B9JG48
LinkDB
All DBs
Position
1:complement(23680..27246)
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AA seq
1188 aa
AA seq
DB search
MSDLPANELAALPESDDAGAWIGWTTVQQSIASDPERSAWVSANAGSGKTHVLTQRVIRL
LLAGARPSAILCLTYTKAAASEMSNRVFDRLAAWATLSDEELKARIAEIEGAEPDLFKLA
EARRLFAKALETPGGLKIQTIHAFCEALLHQFPLEANVAGHFSVLDDRAAATLLDDARRS
LLAATTPQRDAELAEAFSYVLDLGDESGLETLLGDIVAKRNAIRRFTTDAERKGGIDAAL
LARLGLSAGDTEAGIAEQYWPLPGLSGATLELYLTLADQKGGAKAQEVAYALRLAKRETH
PVARAEILEKVMLTGKGEPKSDSQFFVKAMLADAPALAEAVAAARAHVVTCRDRLKLMRM
YRATRAALVLADRLNRDYEELKKRRSQLDFEDLITRTADLLTKKDVGPWIHYKLDQGIDH
ILVDEAQDTSPIQWSVIQSLAEDFFSGESARQTLRTIFAVGDEKQSIYSFQGARPERFSE
ESDRTRRRVATSGQQFSSIRLPLSFRSTADVLAAVDHVFTAPENARGLSAVDEPVVHRSS
RIGHPGAVDLWEMIAPEPAAKEEDWTAPFDSTPESAPAAILARRMAQTIGNLIGRETIIE
KGKARFIEAGDILVLVRKRDSFVNALTRALKRRNNIPVAGADRLVLTSHIAIQDLLALGR
FLLLPEDDLSLSALLKSPLFDLGEDDVFAVAALRGSDESVWNHLQKFADDGNERFRHAVD
RLKTFLALSKSLSVHDFYARVLGSFGGRRQFLARLGTEVSDILDEFLTFTLDHETSGLPG
LQSFVSTLELEAPTVKREQDKGRNEVRIMTVHASKGLEAPIVFLVDGGGKAFTHTHLPKM
RLIETGKQDIPLPVWVPVSALANSLTQADTARLQSLTEEEYRRLLYVGMTRAADRLIICG
YRGIRENADTWHAMISAALRQDGERCTPVSFSGPDGEWQGLSWRVSQVERSFERMEQAET
TVDRGALPAGLSRPLPPQRNLPRPLSPSGAGTVIDDEADNLLVTSPLFTEKAKSDRSLEK
GRFIHRMLQTLPEIASADRAEAARRYAERAARFWPQAERDALIGSVMALLSHPELQGVFS
AHAQAEVSIMGTLTLDDQAYAVSGRIDRLTVLDDRVVILDYKTNRVPPRSAEQIPFAHRA
QLAIYREILSPLYPGKRIDCVLVYTENASIHTLSGEALALTLAELKTK
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaccttcccgctaacgaactggccgccctgcccgagagcgacgatgccggcgcc
tggatcggctggacgacagtgcagcaatccatcgcctccgaccccgagcgctccgcctgg
gtctcggccaatgccggttcgggcaagacgcatgtgctgacgcagcgcgtcattcgcctg
ctgctcgctggcgcacgtccctcggccattctctgcctgacctataccaaggccgctgcc
tccgaaatgtcgaaccgcgtcttcgaccgactggccgcctgggcaaccttgtcggacgag
gagttgaaggcgcggattgccgagatcgagggtgcggagccggatctgtttaagctcgcc
gaggctcggcgtctcttcgccaaggcgctggagacaccgggcgggctgaagatccagacg
atccacgccttctgtgaggcgctgctgcatcaatttccgctggaggccaatgtcgcaggg
catttttccgttctcgatgaccgcgccgccgcaaccctactcgacgacgcccgccggtcg
ttgctggcggcgacaacgccgcagcgggatgccgagcttgcggaagccttttcctatgtg
ctggatctcggcgacgaatccggtcttgagacgctgctgggcgatatcgtcgccaagcgt
aacgccatccgccgcttcaccactgacgcagagcggaaaggcgggattgacgccgcgcta
ctcgcccggctcggcctttccgccggagacacggaagccggcatcgcggagcaatattgg
ccgctgcccggcctttccggcgcaacgctcgagctttatctcacgcttgccgaccagaag
ggcggcgcgaaggcgcaagaggttgcctatgcactgcgtctcgccaagcgtgagacgcac
ccggtcgcccgcgcggagatcctcgaaaaggtgatgctgaccggcaagggcgagccgaaa
tccgacagccagtttttcgtcaaggcgatgctggctgatgcccccgcgcttgccgaggca
gtggctgctgcccgcgcccatgtcgtcacctgccgcgaccggctgaagctgatgcggatg
taccgcgccacccgcgcggcactcgttctggccgaccggctgaaccgcgactatgaagag
ctgaagaagcgccgcagccagctcgacttcgaagacctgattacccgcaccgccgatctt
ctgaccaagaaggatgtcggcccctggatccactacaaactggatcagggcatcgaccat
attctcgtcgacgaggcgcaggataccagcccgatccaatggagcgtcatccagtcgctg
gcggaggatttcttctctggcgaaagcgcgcggcagacgctgaggaccatcttcgcggtc
ggcgacgagaagcagtcgatctattccttccagggtgcgcgacccgaacgtttttccgag
gaaagcgaccggacgcgacggcgggtggcgaccagcggccagcagttttcctcgatccgc
ctgccgctctccttccgctcgaccgccgatgtgctcgccgccgtcgaccatgtcttcacc
gcaccggaaaatgcccgggggctgagcgctgtcgacgaacctgtggtgcatcgctccagc
cgcatcggccatcccggggcagtcgatctctgggagatgatcgcgccggagcctgcagcg
aaggaagaggattggacggcaccgttcgattcgacgcctgaaagtgcgccggcggcaatc
ttggcgcggcgcatggcgcagacgatcggcaatctcatcggccgcgagacgatcatcgaa
aagggcaaggcccgtttcatcgaggctggcgacattctcgtgctggtgcgcaagcgcgac
agcttcgtcaatgcgctgacccgggcgctcaagcgacgcaacaatatccccgttgccggc
gccgaccggttggtgctgaccagccatatcgccattcaggatcttctggcgcttggccgt
tttctgctgctgccggaagacgacctgtcgctctcggctcttttgaagagcccgctgttc
gatctcggtgaggacgatgtctttgcggtcgcggcccttcgcggcagcgatgaaagcgtg
tggaaccacctgcagaaattcgccgatgacggcaatgagcggttccgtcatgcggtcgac
cggcttaaaacctttctcgccttgtcgaaaagtctgtccgtgcatgatttctatgcccgc
gtgcttggcagtttcggtggccggcggcagtttctggcgcggctcgggaccgaggtcagc
gatattctcgacgaattcctgactttcacgctcgaccacgagacctccggcctgccgggc
ctgcaatccttcgtctcgacgctggagctggaagcgccgacggtgaagcgcgagcaggac
aagggccgcaacgaggtgcggatcatgaccgtgcacgcctccaagggcctggaggcgcca
atcgtcttcctcgtcgacggcggcggcaaggcctttacccatacgcatctgccgaagatg
cggctgatcgagaccggcaaacaagacatcccgctgccggtctgggtgccggtctcggca
ctggccaattcattgacgcaggccgataccgccaggctacaatcgctgacggaagaggaa
tatcgccgcctgctctatgtcggcatgacccgcgccgccgaccggttgatcatctgcggc
tatcgtggcatccgtgagaatgccgatacatggcacgccatgatttccgcggcgctgcgg
caggacggcgaacgctgcacacccgtcagcttctcggggccggatggcgagtggcagggg
ttgagctggcgcgtttcccaggtcgagcgcagtttcgagcgcatggaacaggcggaaacg
accgtcgatcgcggagcgctgcctgccgggctcagccggccgctgccaccgcagcgaaac
ctgccccggccgctcagcccttccggcgccggcaccgtcatcgacgacgaggccgacaat
ctgctggtcacctcgccgctgttcaccgagaaggcgaaatcggatcgctcgctggaaaag
ggccgcttcatccaccgcatgttgcagacattgcccgagatcgcgtcggcggatcgcgcc
gaggcagcgcggcgctatgccgaacgggccgcacgcttctggccgcaagcggagcgtgat
gcgctgatcggctccgtcatggcgctgctgtcacacccggaactacagggcgttttcagt
gcccatgcccaggccgaagtctcgatcatgggcacgctgacgcttgatgaccaggcctat
gccgtctccggccgcatcgaccggctgaccgtactcgacgaccgcgtcgtcatcctcgac
tacaagaccaaccgcgtgccgccgcgctcagccgagcagattccttttgcccaccgagcg
cagcttgccatctatcgtgagatcctctcgccactctatccaggcaagcgcatcgattgc
gtgctcgtttataccgagaatgcctcgatccacacgctgtccggcgaggcgctcgcattg
acgcttgcggagctcaagacaaagtga
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