Rhizobium rhizogenes K84: Arad_0963
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Entry
Arad_0963 CDS
T00850
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ara
Rhizobium rhizogenes K84
Pathway
ara03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ara00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Arad_0963 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ara03019
]
Arad_0963 (deaD)
03009 Ribosome biogenesis [BR:
ara03009
]
Arad_0963 (deaD)
Enzymes [BR:
ara01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Arad_0963 (deaD)
Messenger RNA biogenesis [BR:
ara03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Arad_0963 (deaD)
Ribosome biogenesis [BR:
ara03009
]
Prokaryotic type
rRNA helicases
Arad_0963 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
ACM25531
UniProt:
B9J9C9
LinkDB
All DBs
Position
1:789462..791372
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AA seq
636 aa
AA seq
DB search
MTEFEGIVPAIAQALAKRGYETLTPVQKSMLDPDLAGKDALVSAQTGSGKTVAFGLALAP
TLLDGAERFGRAGTPLALAIAPTRELALQVQRELEWLYELTGATIVSCVGGMDMRTEKRA
LERGAHIVVGTPGRLCDHIRRNSLDISKLKAVVLDEADEMLDLGFREDLEFILETSPTER
RTLMFSATVPRSIAKLAENYQRDAVRIASATEAKQHVDIDYRALTVVPSDRENAIINVLR
YYEAQNAIVFCSTRAAVNHLTARFNNRGFSVVALSGELSQSERTHALQAMRDGRARVCIA
TDVAARGIDLPGLDLVIHADIPTNPETLLHRSGRTGRAGRKGVSALIVPLSGRRRTERLL
EAARIRATWAKPPSADEVSQRDDERLLADPIFSAPLGEDEQSLVQQLLRTHGAEQVAAAF
LRQYRAGHSAPEDLQDVPAEGERKKPRRDDFPVTRYDEAPAGAGRNDFTDGVWVSLSVGR
KQNAEPRWLIPMLCRNGNLTKRDIGAIKMQPEETFVEFSAEGAERFLTAIGPDKTLERGI
RVKPLDGIPDFSQAKREGGYGKKPFAEKSARPYDDSKPKWKSDRKPERAQAGEGASDKKP
WAKKPGKPNFAKSDAGSPAGKPNSRAKRKAEKARGE
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaattcgaaggcatcgttcctgcgattgcccaggctttggcaaagcgtggttac
gaaacgctgacgccggtacaaaagtcgatgctcgatcccgaccttgctggcaaggacgcg
ttggtttcggcccagaccggctccggcaagacggttgccttcggcctggcgctggccccg
acccttttggacggcgccgaacgcttcggccgcgccggcacgccgctggcgctggcgatc
gcgccgacccgcgaactcgcactgcaggtccagcgcgaactggaatggctctatgagctg
accggcgccaccatcgtctcctgcgtcggcggcatggacatgcggaccgaaaagcgggcg
ttggagcgcggcgcgcacatcgtcgtcggcacgccgggccgtctttgcgaccatatccgc
cgcaactcgctcgatatttccaagctgaaggcggtcgtgctggacgaggctgacgagatg
cttgatctcggcttccgtgaggatctcgaattcatcctcgagacatcgccgaccgaacgg
cggacgctgatgttctcggcgaccgtgccgcgttcgatcgccaagcttgccgaaaactac
cagcgtgatgccgtccgcattgccagcgccacagaagccaagcaacatgtcgatatcgac
tatcgcgcgctgacggtcgtgccgagcgacagggaaaacgccatcatcaacgttctgcgc
tattacgaagcgcagaacgcgatcgtcttctgctcgactcgcgccgcggtcaaccatctg
acggcacgcttcaacaatcgcggtttctccgtcgttgccctctccggcgagcttagccag
agcgagcgtacgcatgcgctccaggccatgcgcgatggtcgcgcccgcgtctgcatcgcc
accgacgtcgccgcccgcggcatcgacttgccgggcctcgatctggtgatccacgctgac
ataccgaccaatccggaaacgctgctgcatcgcagcggccgcaccggtcgtgctggtcgc
aagggcgtcagcgccctgatcgtgccgctcagcggccgtcgccgcacggaacgcctgctg
gaagccgcccgcattcgcgccacctgggcaaagccgccatcggccgatgaggtcagccag
cgtgacgacgagcgtcttctcgccgatccgatcttctccgcgccgctgggcgaggacgaa
cagtcgctggtgcagcagctgttgcggacccatggcgccgaacaggtcgccgccgctttc
ctgcgtcaataccgcgccggtcattccgcgccggaagacctgcaggatgtaccggccgaa
ggcgagcgcaagaagcctcgccgcgacgattttccggtcacgcggtatgacgaagcgccc
gccggcgctggccgcaacgatttcaccgatggtgtctgggtatcgctctcggtaggccgc
aagcagaatgccgagccgcgctggctgatcccgatgctgtgccgcaacggcaacctcacc
aagcgcgacatcggcgcgatcaagatgcagccggaagaaaccttcgtcgagttctccgcc
gaaggcgccgagcgcttcctgacagccatcggcccggacaagaccctggagcgcggaatc
cgcgtcaagccgctcgacggcatccctgatttttcgcaggccaagcgcgagggaggctac
ggcaaaaagcccttcgccgagaagagcgctcgcccatacgacgacagcaagccgaaatgg
aaatccgaccgcaagccggaacgggcacaggccggcgagggcgcttccgacaagaagccc
tgggcgaagaagccgggcaagccgaacttcgccaagagcgatgcgggttcgccggccggc
aagccgaattcgcgggccaagcgcaaggctgagaaagctcgcggcgaatag
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