Rhizobium rhizogenes K84: Arad_1876
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Entry
Arad_1876 CDS
T00850
Symbol
dnaEch1
Name
(GenBank) DNA polymerase III alpha subunit protein
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ara
Rhizobium rhizogenes K84
Pathway
ara03030
DNA replication
ara03430
Mismatch repair
ara03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ara00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Arad_1876 (dnaEch1)
03430 Mismatch repair
Arad_1876 (dnaEch1)
03440 Homologous recombination
Arad_1876 (dnaEch1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ara03032
]
Arad_1876 (dnaEch1)
03400 DNA repair and recombination proteins [BR:
ara03400
]
Arad_1876 (dnaEch1)
Enzymes [BR:
ara01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Arad_1876 (dnaEch1)
DNA replication proteins [BR:
ara03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Arad_1876 (dnaEch1)
DNA repair and recombination proteins [BR:
ara03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Arad_1876 (dnaEch1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
HROB
Motif
Other DBs
NCBI-ProteinID:
ACM26204
UniProt:
B9JDK3
LinkDB
All DBs
Position
1:1487215..1490778
Genome browser
AA seq
1187 aa
AA seq
DB search
MDFIVRYADNAADSFGHAEGHKMAGMTSSGATSAPVGDTPEFVHLRVHSAYSLLEGALPL
KKILAKAAGDNQPAIAVTDTNNLFVALEFSQKAMDEGLQPIIGCQVSIDMEDGVEGEKRG
PQQALAKLPSIVLFAATERGYERLVDLVSRAYLGGEGNQAVHITASWLEEIGTEGMIALT
GSLGGPVDMALKEGHAPQALSRLLALKRLFGDRLYIELQRHGTYDRRHEQKMIALAYEHE
LPLVATNEAFFPTRDDYDAHDALMAVAHNAIVSDDTRFRLTPDHYLKSRADMAKLFANLP
EALENTVEIARRCSFVLKTRKPILPRFTGAADDEEEADRAESAELRAQAIEGLDQRLASL
GMAPGYVEKDYRERLEFELSVIERMKFPGYFLIVADFIKWAKRHDIPVGPGRGSGAGSLV
AYALTITDVDPLRFSLLFERFLNPERVSMPDFDIDFCQDRREEVIRYVQAKYGREQVAQI
ITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPNNPANPTPLHQAIKEEPRLQEEADKE
PVVARLLDIAQKIEGLYRHASTHAAGIVIGDRPLSKLVPMYRDPRSDMPVTQFNMKWVEQ
AGLVKFDFLGLKTLTVLKTAVDFVAKRGISIDLASIPLDDKKTYDMLSRGETVGVFQVES
AGMRKALIGMRPDCIEDIIALVALYRPGPMENIPVYNARKHGEEEIESIHPTIDYLLKET
QGVIVYQEQVMQVAQVLSGYSLGEADLLRRAMGKKIKAEMDQQRERFVDGAVKNGVSKGQ
SDVIFDLLAKFANYGFNKSHAAAYAIVSYQTAYMKAHYPVEFLAASMTLDMANTEKVNDF
RQDAKRLGIEVIAPSIQTSFRRFETGENRIYYALAALKGVGESAVDHIVEVRGDQPFAGI
EDFCLRIDPKQINRRVLESLIAAGAFDCFEIDRAQLIGGIDRIMGYAQVAQENKRSGQHD
MFGSAASGPEKISFPPFTPWLASERLLREFQVLGFYLTAHPLDTYKSVLDKMRVQNFADF
SAAVKQGASNGRLAGTVISKQERKTRTGNKMGIFVFSDASGQFEAVLFSEVLNQYRDVLE
VGKSFVVTAQADERPEGISLRLQTAQSLEEKSLQMQKALRVYVRDSGPLKAVAAHLNAKG
DGLVSFIVIKEEGKREVEVVLAEKYRITPEIAAALRTAPGVIDVELV
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
ctggactttatcgtccgctatgccgacaatgcagccgattcatttgggcatgcggaaggg
cataaaatggcgggtatgacgagcagcggcgcgacgagcgcaccggtcggtgacacgccg
gaattcgtgcatcttcgtgtccactccgcctattcgctgctcgagggcgcgttgcccctg
aagaagatccttgccaaggcggccggcgacaatcagccggccattgccgtcaccgacacc
aacaatcttttcgtcgcgctggagttttcccagaaggcgatggacgagggcctgcaaccg
atcatcggctgtcaggtgtccatcgatatggaggatggtgtcgagggcgagaagcgcggt
ccgcagcaggctttggccaagctgccgtctattgtattgtttgccgccaccgagcggggc
tatgagcggctggtcgatcttgtcagccgcgcctatcttggcggcgagggcaatcaggcc
gttcatatcaccgcctcctggctggaagagatcggcacggaagggatgatcgcgctgacg
gggtcgctcggcggtccggtcgacatggcgctgaaggaggggcacgcgcctcaggcactg
tcgcggcttctggcgctgaagcgcctgttcggcgaccggctttatatcgagctgcaacgt
catggcacctatgaccgccgccacgaacaaaagatgatcgcgctcgcctatgagcacgag
ttgccgctggtcgccaccaacgaagccttcttcccgacccgcgacgattacgatgcccat
gacgcgctgatggcggtcgcccataacgccatcgtttcggacgatacccgtttccgcctg
acgccggatcattatctgaagagccgcgccgatatggcgaagctgttcgccaacctgccg
gaagcgctggaaaacactgtcgagatcgcgcggcgctgctctttcgtgctcaagacccgc
aagccgatcctgccgcgcttcaccggcgccgccgacgatgaggaagaggccgatcgcgcc
gaatccgcggagttgcgcgcccaggcgatcgagggtctcgaccagcggctcgcgtcgctc
ggcatggcgccgggttatgtggaaaaggactatcgcgagcggctggagttcgagctcagc
gtcatcgaacgcatgaagttccccggctacttcctgatcgttgcggacttcatcaaatgg
gcgaagcgccacgatattccggttggaccgggccgtggttcgggcgcgggatcgctggtc
gcctatgcgctgaccattaccgatgtcgatccgctgcgtttctcgctactgttcgagcgc
ttcctcaatcccgaacgcgtgtcgatgccggactttgacatcgacttctgccaggatcgc
cgcgaagaggtgatccgctatgttcaggccaagtatggccgcgagcaggtggcgcagatc
atcaccttcggttcgttgcaggcgcgtgccgcccttcgcgacgtcggccgcgtgctggaa
atgccctatggccaggtcgacaagatctgcaagctggtgccgaacaaccccgccaatccg
acaccgctgcaccaggcgatcaaggaagagccgcgcctgcaggaagaggccgacaaggaa
ccggtcgtcgcccgcctgctcgacatcgctcagaagatcgagggtctctatcgccatgcc
tcgacgcacgccgccggcatcgtgatcggcgaccggccgctgtcgaagctggtgccgatg
tatcgcgatccgcgctccgacatgccggtcacccaattcaacatgaaatgggttgagcag
gctggcctggtaaaattcgactttcttggcctgaagacgctgacggtcctgaagacggcg
gtcgatttcgtcgccaagcgcggcatcagcatcgatctcgccagcatcccgctcgacgac
aagaagacttacgacatgctttcgcgcggcgagacggtcggcgtgttccaggtggaaagt
gcgggcatgcgcaaggcgctgatcggcatgcgcccggactgcatcgaggatatcatcgcg
ctcgtggcgctctatcgcccgggcccgatggaaaacatcccggtctacaatgcccgcaag
catggcgaggaagagatcgaatcgatccatccgaccatcgactatctgctgaaggaaacc
cagggcgtcatcgtctaccaggagcaggtgatgcaggttgcccaggttctgtcgggctat
tcgctcggtgaagcggatcttctgcgccgcgccatgggtaagaagatcaaggcggagatg
gaccagcagcgcgagcgcttcgttgatggcgccgtcaagaatggtgtgtcgaagggccag
tcggatgtcattttcgatctgctcgccaagttcgccaattacggcttcaacaagtcgcac
gccgccgcctatgccatcgtctcctatcagacggcctatatgaaggcgcattatcccgta
gagttccttgcagcgtcgatgacgctcgatatggcgaacaccgaaaaggtcaacgacttc
cgccaggacgccaagcgcctcggcatcgaagtgatcgcgccgtcgatccagacctcgttc
cgccgtttcgagacgggcgagaaccgcatttattacgctctggccgccctcaagggtgtc
ggcgaatccgccgtcgaccatattgtcgaggtccgcggcgaccagcctttcgcgggtatc
gaggatttctgcctgcgcatcgatccgaagcagatcaaccgccgtgtactggaaagtctg
atcgccgccggcgccttcgattgcttcgagattgaccgcgcgcagctgatcggcgggatc
gaccggatcatgggctacgcgcaggtcgcgcaggaaaacaagcgcagcggtcagcacgat
atgttcggaagtgccgcttccgggcctgagaagatttccttcccgccgttcacgccctgg
ctcgcctcggagcggctgctgcgtgaattccaggttctcggcttctatctgacggcccat
ccgctcgacacctacaagagcgtgctggacaagatgcgcgtgcaaaactttgccgacttc
tcggcggcggtgaagcagggggccagcaacggccgtctggcgggtacggtcatttcgaag
caggagcgcaagacgcgcaccggcaacaagatgggcattttcgtcttctccgacgcttcg
gggcagttcgaagccgtgctgttctctgaagtgctcaatcagtatcgcgatgtgctcgaa
gtgggcaaatccttcgtcgtcacggcccaggccgacgagcggccggaaggcatcagcctg
cggctgcagacggcacagtcattggaagagaagtcgctgcagatgcaaaaggcgctgcgc
gtctatgtccgcgattccggcccgctgaaggcagtagccgcccatctcaacgccaagggc
gatggcctcgtctccttcatcgtcatcaaggaggagggcaagcgcgaggtcgaggtggtg
ctggctgagaaataccgtatcacgccggagatcgccgcggccctgcgcacagcgcccggc
gtgatcgatgtggagctggtctag
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