Rhizobium rhizogenes K84: Arad_3117
Help
Entry
Arad_3117 CDS
T00850
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor protein (sigma-70)
KO
K03086
RNA polymerase primary sigma factor
Organism
ara
Rhizobium rhizogenes K84
Pathway
ara02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ara00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Arad_3117 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ara03021
]
Arad_3117 (rpoD)
Transcription machinery [BR:
ara03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Arad_3117 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
DUF5856
Relaxase_C
Phage_DsbA
DUF4351
DUF3106
Motif
Other DBs
NCBI-ProteinID:
ACM27144
UniProt:
B9J737
LinkDB
All DBs
Position
1:complement(2477141..2479204)
Genome browser
AA seq
687 aa
AA seq
DB search
MATKVKENEEAEVERDGTSDGPLLDLSDDAVKKMIKAAKKRGYVTMDELNAVLPSEEVTS
EQIEDTMAMLSDMGINVIEDEDVEEAGAATSSDDDDSSDDDNGEGGELAPSTGSALATAK
KKEPTDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIGGLCESPLTFQALII
WRDELNEGTTLLREIIDLETTYSGPEAKAAPQFQSPEKIEADRKAAEEKEKARRGRSPSG
DDDITDVGGEGLPGEEEEEDEDESSLSLAAMEAELRPQVMTTLDTIAETYKKLRKLQDQQ
VEQRLSASGTLSSAQERRYKELKDELVKSVKSLSLNQNRIDALVEQLYDINKRLVQNEGR
LLRLAESYGVKRDSFLEQYQGAELDPNWMKSIGNLAARGWKEFAKSENTTIRDIRQEIQN
LATETGISISEFRRIVHMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQ
EGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRT
SRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDK
NALLPIDAAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRER
IRQIEAKALRKLKHPSRSRKLRSFLDS
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccaaggtcaaagagaacgaagaagctgaagtcgaacgcgacggcacctccgat
ggcccgcttctcgatctttccgacgacgcggtcaagaagatgatcaaggccgcgaagaaa
cgcggctacgtgacgatggacgagctcaacgccgtcctgccgtccgaagaagtgacgtcc
gaacagatcgaagatacgatggcgatgctctccgatatgggcatcaacgtcattgaagac
gaggatgtcgaagaggcgggcgcggcaaccagcagcgacgatgacgattccagcgacgac
gacaatggggaaggcggcgaactcgcaccttccacaggttcggcgcttgctaccgccaag
aagaaagagccgaccgaccgcacggacgatccggtgcgtatgtacctgcgcgaaatgggt
tcggtcgaactgctgtcgcgcgaaggtgaaatcgcgatcgcgaagcgcatcgaggccggc
cgcgagaccatgatcggtggcctctgcgaaagcccgttgacgttccaggcgctgatcatc
tggcgcgacgaactcaacgaaggcacgacgctgctgcgcgagatcatcgatctcgaaacc
acctattccggcccggaagccaaggctgcgccgcagttccagagcccggaaaagatcgag
gcggaccgcaaggccgctgaagagaaggaaaaggcccgtcgcggccgttcaccttccggc
gatgacgacatcaccgatgtcggcggtgaaggcttgccgggcgaggaggaggaagaggac
gaggacgaatccagcctctcgctcgccgcgatggaagccgaactgcgcccgcaggtgatg
acgacgctcgacacgattgccgaaacctacaagaagctgcgcaagctgcaggaccagcag
gtcgagcagcgtctgtctgcatcgggcacgctgtcgtcggctcaagagcgtcgttacaag
gagctcaaggatgagctggtaaagtcggtcaagtctctgtcgctgaaccagaaccgcatc
gacgctctcgtcgagcagctctacgacatcaacaagcgcctcgtgcagaacgaaggccgg
ttgctgcgccttgccgaatcttatggcgtcaagcgcgatagcttcctggaacagtatcag
ggcgccgagcttgatccgaactggatgaagtccatcggcaatctggccgcgcgcggctgg
aaggaattcgccaagagcgaaaacaccacgatccgcgacattcgccaggaaattcagaac
cttgcgaccgaaaccggtatctccatctcggaattccgccgcatcgtgcatatggtgcag
aagggtgagcgcgaagcgcgtatcgctaagaaggaaatggtcgaagcgaacctccgcctc
gtcatctccatcgccaagaaatacaccaaccgcggtcttcagttcctcgatcttattcag
gaaggcaatatcggcctgatgaaggcggtcgataagtttgaatatcgccgcggctacaag
ttctcgacctacgcgacctggtggatccggcaggcgatcacccgttcgatcgccgaccag
gcccgcacgatccgtattccggtgcacatgatcgaaacgatcaacaagatcgttcgcacg
tcgcgccagatgctacacgaaatcggccgcgagccgacgccggaagaactggctgaaaag
ctcgccatgccgctcgaaaaagtgcgcaaggtgctgaagatcgccaaggagccgatctcg
ctcgaaacgcctgttggtgacgaagaagattcgcatctcggcgatttcatcgaggacaag
aatgcgctgctgccgattgacgccgccatccaggcgaacctgcgcgagacgacgacccgt
gtgctggcctcgctgacgccgcgtgaagagcgcgtgctgcgcatgcgcttcggtatcggc
atgaacacggaccacacgctcgaagaagtcggccagcagttctcggtcacccgcgaacgt
attcgccagatcgaagcgaaggcgctgcgcaagctgaagcacccgagccgcagccgcaag
ctgcgctcgttcctcgacagctaa
DBGET
integrated database retrieval system
