Rhizobium rhizogenes K84: Arad_3338
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Entry
Arad_3338 CDS
T00850
Symbol
rhlE2
Name
(GenBank) ATP-dependent RNA helicase protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ara
Rhizobium rhizogenes K84
Pathway
ara03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ara00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Arad_3338 (rhlE2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ara03019
]
Arad_3338 (rhlE2)
Enzymes [BR:
ara01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Arad_3338 (rhlE2)
Messenger RNA biogenesis [BR:
ara03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Arad_3338 (rhlE2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
NAT10_TcmA_helicase
AAA_19
AAA_22
Utp25_C
Flavi_DEAD
DUF4688
CMS1
Motif
Other DBs
NCBI-ProteinID:
ACM27320
UniProt:
B9J7Z9
LinkDB
All DBs
Position
1:2666322..2667992
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AA seq
556 aa
AA seq
DB search
MVRPGLFALAPPKGIELTDFHSLGLSKQIVDTLSQNNFATPTPIQAQAIPLVLQGRDLIG
LAQTGTGKTAAFGLPIIEMLLKDAKRPDNRTVRTLILAPTRELVNQIADNLKLFVRKTAL
RINVVVGGASINKQQLQLERGTDILVATPGRLLDLISRRALSLGQVSYLVLDEADQMLDL
GFIHDLRKISKMVPAKRQTMLFSATMPKTIADLAAEYLTNPVKVEVSPPGKAADKVEQYV
HFVSGQNHKTEILKESISANPDGRAMVFLRTKHGAEKLMKHLEHVGFAAASIHGNKSQGQ
RERALKGFRDGEVRVLVATDVAARGIDIPGVTHVYNYDLPEVPDAYVHRIGRTARAGRDG
IAIAFCAPDEARLLRDIERLMGIEIAVASGEAPADRGRPARGNNRAGGRGGQGQGQGRGG
AGQGRAEGRPARPARRPHREGEAGEARAHNGERQERRPQRENNRNADFRGQRRDERAPRP
EVDNDLASTSDFRPAKKPQHNGAANEAGAHRGPRHAHGRPTGRHEDRGQNAQGEQRKDGG
MKRRGPGNGGQRRERA
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atggtgcgacccggcctatttgctttggcgcccccgaaaggtattgaattgaccgatttt
cactcgcttggtctctccaagcagatcgtcgatacgctgtcgcagaacaacttcgcgacg
ccgacgccgatccaggcacaggctatcccgcttgtcctgcagggccgcgacctcatcggc
ctcgcccagaccggcaccggcaagaccgccgctttcggcctgccgatcatcgaaatgctg
ttgaaggacgccaagcgtcccgataaccgcaccgtccgtacgcttatcctcgcccccacc
cgcgaactggtgaaccagatcgccgacaacctcaagctcttcgtccgcaagacggcgctg
aggatcaacgtcgtcgtcggtggcgcctcgatcaacaagcagcagctgcagctcgagcgc
ggcaccgacattctcgtcgccacccccggccgtctgctcgacctcatcagccgccgcgcc
ctgtcgctcggccaggtgagctacctcgtcctcgacgaagccgaccagatgctcgacctc
ggcttcatccacgatctgcgcaagatctccaagatggtcccggccaagcgccagaccatg
ctgttctcggccaccatgccgaagacgatcgccgatctcgctgccgaatatctgaccaac
ccggtcaaggtcgaagtgtcgcctccgggcaaggccgccgacaaggtggaacagtatgtc
cacttcgtttctggccaaaaccacaagaccgagatcctgaaggaaagcatttccgccaat
ccggatggccgcgccatggtcttcctgcgcacaaagcacggcgccgagaagctgatgaag
catctcgaacacgtcggctttgcagccgcctcgatccacggcaacaagagccaaggtcag
cgcgagcgcgccctgaagggcttccgtgacggcgaagtccgcgttctcgtcgccaccgac
gtcgccgcacgcggcatcgacatccccggcgttacgcatgtctataactacgacctaccg
gaagtgccggacgcctacgtccaccgcatcggccgtaccgcacgcgccggccgcgacggc
atcgccatcgcgttctgtgctcccgacgaagcccgcctgctgcgcgacatcgagcgcctg
atgggcatcgaaattgccgttgccagcggcgaagccccggccgatcgtggccgtccggct
cgcggcaacaaccgcgcaggcggtcgtggtggtcagggccaaggccagggtcgtggcggc
gcaggtcagggacgtgccgaaggccgccccgctcgtccggcccgtcgtcctcatcgcgaa
ggtgaagccggcgaagcccgcgcccataacggcgagcgccaggaacgtcgtccgcagcgc
gaaaacaatcgcaatgccgacttccgtggccagcgccgcgacgagcgcgccccgcgtccg
gaagtagacaacgatctcgcatcgacgtccgattttcgcccggccaagaagccgcagcac
aatggcgcggcaaacgaagccggcgcccatcgcggtccccgccacgctcacggccgtccc
acgggtcgccatgaagaccgtggccagaacgctcagggcgaacagcgcaaggacggcggc
atgaagcgccgcggccccggcaatggcggccagcgccgcgaacgcgcttga
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