KEGG   Rhizobium rhizogenes K84: Arad_4944
Entry
Arad_4944         CDS       T00850                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
ara  Rhizobium rhizogenes K84
Pathway
ara03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ara00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Arad_4944 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ara03021]
    Arad_4944 (rho)
   03019 Messenger RNA biogenesis [BR:ara03019]
    Arad_4944 (rho)
Transcription machinery [BR:ara03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     Arad_4944 (rho)
Messenger RNA biogenesis [BR:ara03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     Arad_4944 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA_22 AAA_25 S1CSD-TOTE-2 NACHT DUF6360 AAA
Other DBs
NCBI-ProteinID: ACM28534
UniProt: B9JEW5
LinkDB
Position
1:complement(4001875..4003140)
AA seq 421 aa
MAEMKLQELKNKSPTELLAFAESLEVENASTMRKQELMFAILKELASQDVEIIGEGVVEV
LQDGFGFLRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGERYFALLKVN
TINFDDPEKIRHKVHFDNLTPLYPNERFRMELDVPTNKDLSSRVIDLVAPLGKGQRGLIV
APPRTGKTVLLQNIAHSITANHPDCYLIVLLIDERPEEVTDMQRSVRGEVVSSTFDEPAV
RHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP
KRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRIFPA
MDILKSGTRKEDLLVPRQDLQKIFVLRRILAPMGTTDAIEFLIDKLKQTKNNPDFFDSMN
T
NT seq 1266 nt   +upstreamnt  +downstreamnt
atggctgaaatgaagcttcaagaacttaagaacaaatccccgaccgaactcctggctttt
gctgaatcgctcgaggtcgaaaacgccagcacgatgcgcaaacaggaactgatgtttgcc
atcctgaaggagctcgccagccaggatgttgaaattatcggggaaggcgttgtcgaagtt
ttgcaggacggtttcggtttcctgcgttccgctaatgccaattacctgccgggtccggac
gatatctatatttcgccgtcgcagatccgccgtttctcgctgaagaccggcgataccgtc
gaagggccgatccgtggaccgaaggaaggcgagcgctatttcgcgctgctgaaggtcaac
accatcaacttcgacgatccggaaaagatccgtcacaaggtccacttcgacaatctgacg
ccgctctatccgaacgagcgtttccgtatggagctcgacgttcccaccaacaaggatctg
tcgtctcgcgtcatcgatctcgtggcgccgctcggcaagggtcagcgcggattgatcgtg
gcgccgccgcgtaccggtaagaccgtcctgctgcagaacatcgcccattcgatcacggca
aaccatcccgattgctatctgatcgttcttttgatcgacgaacgtcctgaagaagtgact
gatatgcagcgctcggtgcgcggcgaagtcgtttcctcgacctttgacgaaccggccgtg
cgtcacgtccaggtcgccgagatggtcatcgagaaggcaaagcgccttgttgaacacggc
cgcgacgttgtcatcctgctcgattcgatcacgcgccttggtcgcgcctacaacaccgtc
gttccctcgtctggtaaggtcctgacgggcggtgtcgatgctaacgccctgcagcgcccg
aagcgcttctttggcgcggcgcgtaatatcgaagaaggcggttcgctgacgatcattgcc
accgcgctgatcgataccggcagccgcatggacgaagtgatctttgaagaattcaagggc
acgggcaactcggaaatcgtgctcgaccgcaaggtcgccgacaagcgcatcttcccggcg
atggatatccttaagtccggcacgcgtaaggaagacctgctggtgccgcgccaggatctg
cagaagatcttcgtcctgcgccgtatccttgctccgatgggcacgaccgacgcgatcgaa
ttcctgatcgataagctgaagcagacgaagaacaatccggatttcttcgactcgatgaac
acctaa

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