Rhizobium rhizogenes K84: Arad_9488
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Entry
Arad_9488 CDS
T00850
Name
(GenBank) DNA ligase protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ara
Rhizobium rhizogenes K84
Brite
KEGG Orthology (KO) [BR:
ara00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Arad_9488
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ara03400
]
Arad_9488
Enzymes [BR:
ara01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Arad_9488
DNA repair and recombination proteins [BR:
ara03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Arad_9488
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ACM30517
UniProt:
B9JKS5
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All DBs
Position
2:complement(2161204..2162091)
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AA seq
295 aa
AA seq
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MAKTPTQDLAKTSVQLTHPERIYWPDDGVSKQDLVDYYALAWSRMAPFVVDRPLALLRCP
DGIKGPRFFQKHAWKGINPHIEEIADPEDKDGEKLLRIRDFDGLAALVQSAALEIHPWGT
TTAHWEKPDMIIMDLDPGDDVAWSAVIAGAQDIKARFAEMGLASFVKTSGGKGLHVVAPL
KPKATWPNVKAAAEAIAHGMSADSPEEYLSVAAKAKRAGHIFIDYLRNGRGNTAVAPYSA
RARPGAAVSMPLAWEELTEKIGPASFTVKNAASRLNDRFADPWADFFEAASPLKS
NT seq
888 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagacgcccacacaggaccttgcgaagacctccgtgcagctgacgcatccggag
cggatatattggccggatgacggcgtcagcaaacaggatcttgtcgactactacgcgctt
gcctggtcgcgcatggcacccttcgtcgttgaccggccgctggcgctgctgcgctgcccc
gacggcataaaaggccctcgttttttccagaagcatgcctggaaaggtatcaatccgcat
atcgaggaaattgctgatccggaggacaaggacggtgaaaaactgttgcggatccgagat
tttgacggacttgccgcgctcgtccaatccgccgcgctggaaatccacccctggggcacg
acgacggctcactgggaaaagcctgacatgatcatcatggatctcgaccccggcgatgat
gtcgcctggagcgcggttatcgccggtgcgcaggacataaaggcgcggttcgcggagatg
gggcttgcctccttcgtcaagacgtcgggcggcaagggattgcatgtggtcgctccgctc
aagcccaaggcgacgtggcctaatgtcaaggccgcagctgaagcgatcgcccatggtatg
agcgccgacagcccggaagaatatctttcggttgccgcgaaagcgaaacgggccggccac
atcttcatcgactatctgcgcaacggccgagggaataccgctgtcgcgccctattcggcc
cgcgcgaggccgggggcagcagtttcgatgccgcttgcctgggaagaattgaccgagaag
atcggcccggcttccttcaccgtcaagaatgcagcttcgcggctgaacgatcgcttcgcc
gatccatgggccgatttcttcgaagccgcgagcccgctgaagagttag
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